Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3526 | 5' | -57.8 | NC_001623.1 | + | 69168 | 0.66 | 0.769843 |
Target: 5'- cGCgGUGGCuggcacgcaCGCGGUGCCGuCAAACa- -3' miRNA: 3'- -UGgUACUGc--------GCGCCGCGGC-GUUUGaa -5' |
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3526 | 5' | -57.8 | NC_001623.1 | + | 125729 | 0.66 | 0.797761 |
Target: 5'- aGCCAaGACGUuuGGCGCCuuAAGCg- -3' miRNA: 3'- -UGGUaCUGCGcgCCGCGGcgUUUGaa -5' |
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3526 | 5' | -57.8 | NC_001623.1 | + | 105360 | 0.66 | 0.797761 |
Target: 5'- ----cGACGCuugaGCGGCGCUGuCAAACg- -3' miRNA: 3'- ugguaCUGCG----CGCCGCGGC-GUUUGaa -5' |
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3526 | 5' | -57.8 | NC_001623.1 | + | 40716 | 0.67 | 0.740796 |
Target: 5'- uGCauugGAUGCGCGGCggguccaacuuGCCGCAaAACUg -3' miRNA: 3'- -UGgua-CUGCGCGCCG-----------CGGCGU-UUGAa -5' |
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3526 | 5' | -57.8 | NC_001623.1 | + | 111799 | 0.67 | 0.700756 |
Target: 5'- uGCCAUGACGuUGCGagaGCGCgGCGuAACa- -3' miRNA: 3'- -UGGUACUGC-GCGC---CGCGgCGU-UUGaa -5' |
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3526 | 5' | -57.8 | NC_001623.1 | + | 124019 | 0.67 | 0.700756 |
Target: 5'- uGCgaAUG-UGUGCGGCGCCGCGAu--- -3' miRNA: 3'- -UGg-UACuGCGCGCCGCGGCGUUugaa -5' |
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3526 | 5' | -57.8 | NC_001623.1 | + | 109957 | 0.68 | 0.680344 |
Target: 5'- gGCCGUGugGaccaaCGCGGCGCCcucGCAcaAAUUg -3' miRNA: 3'- -UGGUACugC-----GCGCCGCGG---CGU--UUGAa -5' |
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3526 | 5' | -57.8 | NC_001623.1 | + | 113241 | 0.69 | 0.617382 |
Target: 5'- uGCCGUGgaaaacuccaacuGCGCGCGcuaccaauGCGCCGaCAAGCg- -3' miRNA: 3'- -UGGUAC-------------UGCGCGC--------CGCGGC-GUUUGaa -5' |
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3526 | 5' | -57.8 | NC_001623.1 | + | 37901 | 0.74 | 0.316731 |
Target: 5'- gACCAUGGCGCGgcgcauuuggaaCGGCGCgGCAGAa-- -3' miRNA: 3'- -UGGUACUGCGC------------GCCGCGgCGUUUgaa -5' |
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3526 | 5' | -57.8 | NC_001623.1 | + | 80250 | 1.04 | 0.003016 |
Target: 5'- aACCAUGACGCGCGGCGCCGCAAACUUu -3' miRNA: 3'- -UGGUACUGCGCGCCGCGGCGUUUGAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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