miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3527 3' -45.7 NC_001623.1 + 15078 0.68 0.999807
Target:  5'- cGCAGACGGCG-UCGacgAGUAUacCGACa -3'
miRNA:   3'- -CGUUUGCUGCuGGCguaUUAUA--GCUG- -5'
3527 3' -45.7 NC_001623.1 + 33664 0.68 0.999597
Target:  5'- uGCAGGuCGgcaaACGGCCGCAUAaccaggccgccGUGUCGuCu -3'
miRNA:   3'- -CGUUU-GC----UGCUGGCGUAU-----------UAUAGCuG- -5'
3527 3' -45.7 NC_001623.1 + 111256 0.68 0.999597
Target:  5'- cGCGAGCG-UGAUCGUgagcGUGAUcgugAUCGGCg -3'
miRNA:   3'- -CGUUUGCuGCUGGCG----UAUUA----UAGCUG- -5'
3527 3' -45.7 NC_001623.1 + 109378 0.69 0.999027
Target:  5'- gGCAgugacAGCGACGACUGUuu--UcgCGACa -3'
miRNA:   3'- -CGU-----UUGCUGCUGGCGuauuAuaGCUG- -5'
3527 3' -45.7 NC_001623.1 + 69201 0.69 0.998806
Target:  5'- gGCAAACGugGAaCGUAaAAaGUUGACa -3'
miRNA:   3'- -CGUUUGCugCUgGCGUaUUaUAGCUG- -5'
3527 3' -45.7 NC_001623.1 + 112598 0.7 0.998543
Target:  5'- gGUcAACGACG-CaaaCAUGAUGUCGACg -3'
miRNA:   3'- -CGuUUGCUGCuGgc-GUAUUAUAGCUG- -5'
3527 3' -45.7 NC_001623.1 + 10013 0.7 0.998234
Target:  5'- cGCAu-CGACGACCGCAUcAAacUCG-Cu -3'
miRNA:   3'- -CGUuuGCUGCUGGCGUA-UUauAGCuG- -5'
3527 3' -45.7 NC_001623.1 + 28539 0.7 0.998234
Target:  5'- cCAGuCGGCGugCGUGUAAcaaaGUCGACa -3'
miRNA:   3'- cGUUuGCUGCugGCGUAUUa---UAGCUG- -5'
3527 3' -45.7 NC_001623.1 + 33268 0.7 0.99787
Target:  5'- cGCAAACcACGcCCGag-GAUAUUGACg -3'
miRNA:   3'- -CGUUUGcUGCuGGCguaUUAUAGCUG- -5'
3527 3' -45.7 NC_001623.1 + 89594 0.7 0.99787
Target:  5'- ---cACGuuGACCaGCAUGGUGUUGGCu -3'
miRNA:   3'- cguuUGCugCUGG-CGUAUUAUAGCUG- -5'
3527 3' -45.7 NC_001623.1 + 90036 0.7 0.99787
Target:  5'- gGCGAGCgcaGACGuCCGCAgacGAUGUCGu- -3'
miRNA:   3'- -CGUUUG---CUGCuGGCGUa--UUAUAGCug -5'
3527 3' -45.7 NC_001623.1 + 45076 0.7 0.997446
Target:  5'- uGCAAucAUGACGAaCGUAUGGUucgCGACg -3'
miRNA:   3'- -CGUU--UGCUGCUgGCGUAUUAua-GCUG- -5'
3527 3' -45.7 NC_001623.1 + 107360 0.7 0.996954
Target:  5'- aGCAAAUGAuCGAUUGUgAUuuUGUCGACg -3'
miRNA:   3'- -CGUUUGCU-GCUGGCG-UAuuAUAGCUG- -5'
3527 3' -45.7 NC_001623.1 + 102178 0.7 0.996954
Target:  5'- uGCAGGCG-CGucuCCGCGUgGAUAUCguGACg -3'
miRNA:   3'- -CGUUUGCuGCu--GGCGUA-UUAUAG--CUG- -5'
3527 3' -45.7 NC_001623.1 + 123101 0.71 0.996386
Target:  5'- cGCGuACGGCGugCGU--GAUcgCGGCa -3'
miRNA:   3'- -CGUuUGCUGCugGCGuaUUAuaGCUG- -5'
3527 3' -45.7 NC_001623.1 + 30825 0.71 0.994141
Target:  5'- cGCAAcaaucGCGAUGACCuCGUGGUAUgGAa -3'
miRNA:   3'- -CGUU-----UGCUGCUGGcGUAUUAUAgCUg -5'
3527 3' -45.7 NC_001623.1 + 122323 0.72 0.990887
Target:  5'- aCAGGCGACGGCgGCG-AGUuggCGGCa -3'
miRNA:   3'- cGUUUGCUGCUGgCGUaUUAua-GCUG- -5'
3527 3' -45.7 NC_001623.1 + 122895 0.72 0.990887
Target:  5'- gGCGuGCGcuCGGCCGCGUuugcaaugAUCGACg -3'
miRNA:   3'- -CGUuUGCu-GCUGGCGUAuua-----UAGCUG- -5'
3527 3' -45.7 NC_001623.1 + 86566 0.72 0.990092
Target:  5'- gGCAGGCGACGAaaucgcuucguucauUCGC-UAcUGUCGGCu -3'
miRNA:   3'- -CGUUUGCUGCU---------------GGCGuAUuAUAGCUG- -5'
3527 3' -45.7 NC_001623.1 + 88336 0.73 0.980263
Target:  5'- cGCAAAUGGCGGCCGUcgAcAUGUUG-Ca -3'
miRNA:   3'- -CGUUUGCUGCUGGCGuaU-UAUAGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.