miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3528 5' -51.5 NC_001623.1 + 106069 0.66 0.989519
Target:  5'- gUGuAGACAuCGAUugGGAGUUUCCgGgCGGCa -3'
miRNA:   3'- -AC-UCUGU-GCUG--UUUUAGAGG-CgGCCG- -5'
3528 5' -51.5 NC_001623.1 + 55415 0.66 0.989519
Target:  5'- uUGA-ACcCGACg----CUCUGCCGGCg -3'
miRNA:   3'- -ACUcUGuGCUGuuuuaGAGGCGGCCG- -5'
3528 5' -51.5 NC_001623.1 + 129489 0.66 0.989519
Target:  5'- aGuGugGCGGCGcuaaacaagAAAUagCCGCCGGUg -3'
miRNA:   3'- aCuCugUGCUGU---------UUUAgaGGCGGCCG- -5'
3528 5' -51.5 NC_001623.1 + 13577 0.66 0.989519
Target:  5'- gGAGACAaagauCGACAggcacuagcGAGUCUgCUGaCGGCg -3'
miRNA:   3'- aCUCUGU-----GCUGU---------UUUAGA-GGCgGCCG- -5'
3528 5' -51.5 NC_001623.1 + 29993 0.66 0.988072
Target:  5'- ---cACACGGCcgcAGUCUCCGgagauuguugcuCCGGCa -3'
miRNA:   3'- acucUGUGCUGuu-UUAGAGGC------------GGCCG- -5'
3528 5' -51.5 NC_001623.1 + 21607 0.66 0.988072
Target:  5'- cGAG-CGCGACAuguugaUUCGUCGGUu -3'
miRNA:   3'- aCUCuGUGCUGUuuuag-AGGCGGCCG- -5'
3528 5' -51.5 NC_001623.1 + 54630 0.66 0.987919
Target:  5'- aUGAGucucaaugucauaGCACGACAAAA-CgggcaugaugCCGCUGGUu -3'
miRNA:   3'- -ACUC-------------UGUGCUGUUUUaGa---------GGCGGCCG- -5'
3528 5' -51.5 NC_001623.1 + 40469 0.66 0.986475
Target:  5'- aGAGGCugGugGAaacuuuuaagGAUCUgCUGCCGcacGCu -3'
miRNA:   3'- aCUCUGugCugUU----------UUAGA-GGCGGC---CG- -5'
3528 5' -51.5 NC_001623.1 + 77001 0.66 0.98472
Target:  5'- aGAGACGCuGCAAAA-CUCgcaaGUgGGCa -3'
miRNA:   3'- aCUCUGUGcUGUUUUaGAGg---CGgCCG- -5'
3528 5' -51.5 NC_001623.1 + 52676 0.66 0.98472
Target:  5'- cGGGAUACGA-----UCUCCguuGCCGGg -3'
miRNA:   3'- aCUCUGUGCUguuuuAGAGG---CGGCCg -5'
3528 5' -51.5 NC_001623.1 + 108746 0.66 0.980694
Target:  5'- aUGcuGCACGACcugauAGUCUCCG-UGGCc -3'
miRNA:   3'- -ACucUGUGCUGuu---UUAGAGGCgGCCG- -5'
3528 5' -51.5 NC_001623.1 + 66619 0.67 0.978406
Target:  5'- cGcGugGCGACG--GUCguaggcaccgUCGCCGGCg -3'
miRNA:   3'- aCuCugUGCUGUuuUAGa---------GGCGGCCG- -5'
3528 5' -51.5 NC_001623.1 + 66431 0.67 0.97324
Target:  5'- aGAGcaACGCGGCcGAGUCcCUGUCGaGCg -3'
miRNA:   3'- aCUC--UGUGCUGuUUUAGaGGCGGC-CG- -5'
3528 5' -51.5 NC_001623.1 + 115670 0.67 0.96691
Target:  5'- cGAGGug-GACAAGcugaagcGUCUCCGCCaGCg -3'
miRNA:   3'- aCUCUgugCUGUUU-------UAGAGGCGGcCG- -5'
3528 5' -51.5 NC_001623.1 + 101233 0.68 0.963897
Target:  5'- ----gUACGACGAGAguuuuUUUCCGCgGGCg -3'
miRNA:   3'- acucuGUGCUGUUUU-----AGAGGCGgCCG- -5'
3528 5' -51.5 NC_001623.1 + 106339 0.69 0.938865
Target:  5'- aGGGACGCGAagauuuCAAAGUUgccauucacgaUCCGUgGGCc -3'
miRNA:   3'- aCUCUGUGCU------GUUUUAG-----------AGGCGgCCG- -5'
3528 5' -51.5 NC_001623.1 + 14628 0.69 0.928522
Target:  5'- uUGAcGCACGAguuguaCGA---UUCCGCCGGCa -3'
miRNA:   3'- -ACUcUGUGCU------GUUuuaGAGGCGGCCG- -5'
3528 5' -51.5 NC_001623.1 + 124713 0.69 0.922967
Target:  5'- cGuGuAC-CGGCAGAGUUcgCCGCCGGUc -3'
miRNA:   3'- aCuC-UGuGCUGUUUUAGa-GGCGGCCG- -5'
3528 5' -51.5 NC_001623.1 + 6352 0.69 0.922967
Target:  5'- -uGGugGCGGCGGug---CCGCCGGUa -3'
miRNA:   3'- acUCugUGCUGUUuuagaGGCGGCCG- -5'
3528 5' -51.5 NC_001623.1 + 87640 0.71 0.861737
Target:  5'- cGGGACGCGGCGuaggcuGcgCggaCGCUGGCg -3'
miRNA:   3'- aCUCUGUGCUGUu-----UuaGag-GCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.