Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 3529 | 5' | -53.7 | NC_001623.1 | + | 94722 | 0.66 | 0.93231 |
|
Target: 5'- aUCgagAGCGACaGGCGG-UCGcGCCGg- -3' miRNA: 3'- aAGaa-UCGUUG-CCGUCaAGC-CGGCac -5' |
|||||||
| 3529 | 5' | -53.7 | NC_001623.1 | + | 11235 | 0.66 | 0.926904 |
|
Target: 5'- ----cGGCGGCGGCAGggaaUgGGUCGUa -3' miRNA: 3'- aagaaUCGUUGCCGUCa---AgCCGGCAc -5' |
|||||||
| 3529 | 5' | -53.7 | NC_001623.1 | + | 92487 | 0.66 | 0.92124 |
|
Target: 5'- gUCgguGCGcucCGGCGGUUCuGGCaCGUGg -3' miRNA: 3'- aAGaauCGUu--GCCGUCAAG-CCG-GCAC- -5' |
|||||||
| 3529 | 5' | -53.7 | NC_001623.1 | + | 98715 | 0.67 | 0.909137 |
|
Target: 5'- gUCUUccAGUAGCGuGCucAGUUCGGUCGa- -3' miRNA: 3'- aAGAA--UCGUUGC-CG--UCAAGCCGGCac -5' |
|||||||
| 3529 | 5' | -53.7 | NC_001623.1 | + | 120018 | 0.68 | 0.858932 |
|
Target: 5'- gUUUUAGUAAagcCGGU--UUCGGCCGUGu -3' miRNA: 3'- aAGAAUCGUU---GCCGucAAGCCGGCAC- -5' |
|||||||
| 3529 | 5' | -53.7 | NC_001623.1 | + | 111638 | 0.68 | 0.842503 |
|
Target: 5'- -aCUUAGUAgGCGGCGG--CGGCgGUGg -3' miRNA: 3'- aaGAAUCGU-UGCCGUCaaGCCGgCAC- -5' |
|||||||
| 3529 | 5' | -53.7 | NC_001623.1 | + | 36981 | 0.7 | 0.778945 |
|
Target: 5'- ---gUAGCAACGGCAGUgguaguaguagCGGuuGUa -3' miRNA: 3'- aagaAUCGUUGCCGUCAa----------GCCggCAc -5' |
|||||||
| 3529 | 5' | -53.7 | NC_001623.1 | + | 67420 | 0.7 | 0.769218 |
|
Target: 5'- aUCgaUAGCGGCGGCGGaggCGGCCu-- -3' miRNA: 3'- aAGa-AUCGUUGCCGUCaa-GCCGGcac -5' |
|||||||
| 3529 | 5' | -53.7 | NC_001623.1 | + | 99924 | 0.72 | 0.634489 |
|
Target: 5'- -----uGCAAUGGCGauuGUUUGGCCGUGg -3' miRNA: 3'- aagaauCGUUGCCGU---CAAGCCGGCAC- -5' |
|||||||
| 3529 | 5' | -53.7 | NC_001623.1 | + | 109937 | 1.06 | 0.005641 |
|
Target: 5'- uUUCUUAGCAACGGCAGUUCGGCCGUGu -3' miRNA: 3'- -AAGAAUCGUUGCCGUCAAGCCGGCAC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home