miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
353 3' -64.2 AC_000011.1 + 12272 0.66 0.234646
Target:  5'- -aGGACCU-UCUCgUGCGUGGGgUUGg -3'
miRNA:   3'- gaCCUGGAcGGAGgGCGCGCCCgAGC- -5'
353 3' -64.2 AC_000011.1 + 9297 0.66 0.223009
Target:  5'- -gGGGCCUGCgUCgCCG-GCGGcGCaCGg -3'
miRNA:   3'- gaCCUGGACGgAG-GGCgCGCC-CGaGC- -5'
353 3' -64.2 AC_000011.1 + 17830 0.67 0.191014
Target:  5'- -aGGAgCUGCCUCCCcuggacaaGCG-GGGCgagaagCGa -3'
miRNA:   3'- gaCCUgGACGGAGGG--------CGCgCCCGa-----GC- -5'
353 3' -64.2 AC_000011.1 + 22711 0.67 0.18609
Target:  5'- aUGGGCC-GCUUCCUGCa-GGGCUUc -3'
miRNA:   3'- gACCUGGaCGGAGGGCGcgCCCGAGc -5'
353 3' -64.2 AC_000011.1 + 16550 0.67 0.176578
Target:  5'- -aGGugCUGCCgaccgcggCgCCGCGCcggGGGUUCa -3'
miRNA:   3'- gaCCugGACGGa-------G-GGCGCG---CCCGAGc -5'
353 3' -64.2 AC_000011.1 + 20249 0.67 0.171985
Target:  5'- aCUGGGCC-GCCUUCCGCgGCuGGUccuUCa -3'
miRNA:   3'- -GACCUGGaCGGAGGGCG-CGcCCG---AGc -5'
353 3' -64.2 AC_000011.1 + 17780 0.68 0.1675
Target:  5'- cCUGGACCcggUGCCgCCCGC-C-GGCUCc -3'
miRNA:   3'- -GACCUGG---ACGGaGGGCGcGcCCGAGc -5'
353 3' -64.2 AC_000011.1 + 15906 0.68 0.146614
Target:  5'- aUGGcCCUGCgUCCCGUGCGccuGGCccugCGc -3'
miRNA:   3'- gACCuGGACGgAGGGCGCGC---CCGa---GC- -5'
353 3' -64.2 AC_000011.1 + 6332 0.69 0.128129
Target:  5'- aCUGGugGCCa-CCUCgCCGCGCagGGGCUCa -3'
miRNA:   3'- -GACC--UGGacGGAG-GGCGCG--CCCGAGc -5'
353 3' -64.2 AC_000011.1 + 8203 1.07 0.000118
Target:  5'- uCUGGACCUGCCUCCCGCGCGGGCUCGu -3'
miRNA:   3'- -GACCUGGACGGAGGGCGCGCCCGAGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.