miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
353 5' -58 AC_000011.1 + 8169 1.08 0.00031
Target:  5'- gACCACCAUCGAGGCAGAAGAGGGCCAg -3'
miRNA:   3'- -UGGUGGUAGCUCCGUCUUCUCCCGGU- -5'
353 5' -58 AC_000011.1 + 20404 0.74 0.123776
Target:  5'- --uGCCGUCGAGGUAGggGAuGGaGCCc -3'
miRNA:   3'- uggUGGUAGCUCCGUCuuCU-CC-CGGu -5'
353 5' -58 AC_000011.1 + 2717 0.72 0.182002
Target:  5'- cACCugCAUCGAGGCcuGggGucaggucggugugaGGGGCUg -3'
miRNA:   3'- -UGGugGUAGCUCCGu-CuuC--------------UCCCGGu -5'
353 5' -58 AC_000011.1 + 13002 0.71 0.19389
Target:  5'- gGCCugUuccUGAuGCAGGAGGGGGCCAc -3'
miRNA:   3'- -UGGugGua-GCUcCGUCUUCUCCCGGU- -5'
353 5' -58 AC_000011.1 + 4855 0.71 0.204774
Target:  5'- aGCUGCCGUCcucccGGaGGAGGGGGGCCAc -3'
miRNA:   3'- -UGGUGGUAGcu---CCgUCUUCUCCCGGU- -5'
353 5' -58 AC_000011.1 + 30798 0.69 0.288932
Target:  5'- gGCCACCAgagCGAGGguGGcacagacuuGGAGGaGgCAg -3'
miRNA:   3'- -UGGUGGUa--GCUCCguCU---------UCUCC-CgGU- -5'
353 5' -58 AC_000011.1 + 30623 0.69 0.288932
Target:  5'- aGCCGCU-UC-AGGUGGAAGGGGGUCu -3'
miRNA:   3'- -UGGUGGuAGcUCCGUCUUCUCCCGGu -5'
353 5' -58 AC_000011.1 + 9452 0.68 0.296422
Target:  5'- uCC-CCGUUG-GGCAgGGAGAGGGCg- -3'
miRNA:   3'- uGGuGGUAGCuCCGU-CUUCUCCCGgu -5'
353 5' -58 AC_000011.1 + 6380 0.68 0.319793
Target:  5'- uCCGCCcuugcgCGA-GCAGAAGGGGGgCAg -3'
miRNA:   3'- uGGUGGua----GCUcCGUCUUCUCCCgGU- -5'
353 5' -58 AC_000011.1 + 20474 0.67 0.344519
Target:  5'- aGCgCACCGUCGAcGGC----GAGGGCUAc -3'
miRNA:   3'- -UG-GUGGUAGCU-CCGucuuCUCCCGGU- -5'
353 5' -58 AC_000011.1 + 14439 0.67 0.344519
Target:  5'- cGCCAUCAUCGAcaauuacuuGGCGGuGGGGcGGCa- -3'
miRNA:   3'- -UGGUGGUAGCU---------CCGUCuUCUC-CCGgu -5'
353 5' -58 AC_000011.1 + 4726 0.67 0.361751
Target:  5'- -aCACgGUuucCGGGGCGGggGAgaugagcuGGGCCGa -3'
miRNA:   3'- ugGUGgUA---GCUCCGUCuuCU--------CCCGGU- -5'
353 5' -58 AC_000011.1 + 10165 0.67 0.361751
Target:  5'- aGCgGCCAUCGcucGGUGGcGGGGGcGCCGg -3'
miRNA:   3'- -UGgUGGUAGCu--CCGUCuUCUCC-CGGU- -5'
353 5' -58 AC_000011.1 + 21118 0.67 0.379573
Target:  5'- gGCCGCgGgcuccggCGA-GCAGGAGcucAGGGCCAu -3'
miRNA:   3'- -UGGUGgUa------GCUcCGUCUUC---UCCCGGU- -5'
353 5' -58 AC_000011.1 + 2838 0.66 0.407387
Target:  5'- uGCCACC--UGGGGguGAugagcGAGGGCgAa -3'
miRNA:   3'- -UGGUGGuaGCUCCguCUu----CUCCCGgU- -5'
353 5' -58 AC_000011.1 + 25048 0.66 0.416938
Target:  5'- uACCACUcggacgugAUCGAGGaCGucagcGgcGAGGGCCu -3'
miRNA:   3'- -UGGUGG--------UAGCUCC-GU-----CuuCUCCCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.