miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
354 3' -52 AC_000011.1 + 789 0.7 0.542597
Target:  5'- uGCCGCgcugCUAGCUGccGAGGAGGCu- -3'
miRNA:   3'- -CGGCGaa--GAUUGGUacCUUCUCCGug -5'
354 3' -52 AC_000011.1 + 6137 0.69 0.588701
Target:  5'- cGUCuuUUCUGACCAgaUGGAcGAGGgGCu -3'
miRNA:   3'- -CGGcgAAGAUUGGU--ACCUuCUCCgUG- -5'
354 3' -52 AC_000011.1 + 8497 1.12 0.000732
Target:  5'- cGCCGCUUCUAACCAUGGAAGAGGCACc -3'
miRNA:   3'- -CGGCGAAGAUUGGUACCUUCUCCGUG- -5'
354 3' -52 AC_000011.1 + 8932 0.66 0.761255
Target:  5'- cGUCGUggUCUAcaGCCGcgucUGGAAcGAGGCGg -3'
miRNA:   3'- -CGGCGa-AGAU--UGGU----ACCUU-CUCCGUg -5'
354 3' -52 AC_000011.1 + 9148 0.76 0.245999
Target:  5'- cGCCGUggacUUUUAcgagGCCAUGGAacguuuGGAGGCGCu -3'
miRNA:   3'- -CGGCG----AAGAU----UGGUACCU------UCUCCGUG- -5'
354 3' -52 AC_000011.1 + 9881 0.68 0.647167
Target:  5'- gGCCGCgcg-GGCgA-GGAGGAGGUGCc -3'
miRNA:   3'- -CGGCGaagaUUGgUaCCUUCUCCGUG- -5'
354 3' -52 AC_000011.1 + 10489 0.66 0.750293
Target:  5'- aGCCGCagCUAA-CGUGGuauuGGCACu -3'
miRNA:   3'- -CGGCGaaGAUUgGUACCuucuCCGUG- -5'
354 3' -52 AC_000011.1 + 11898 0.67 0.716648
Target:  5'- aGCCGCcg--GGCCuUGGAGGcGGCGg -3'
miRNA:   3'- -CGGCGaagaUUGGuACCUUCuCCGUg -5'
354 3' -52 AC_000011.1 + 16462 0.7 0.519982
Target:  5'- aGCCGUUcCgcACCGaaGGAAGAGGCGg -3'
miRNA:   3'- -CGGCGAaGauUGGUa-CCUUCUCCGUg -5'
354 3' -52 AC_000011.1 + 17904 0.68 0.647167
Target:  5'- gGUCGCUUCUcGCCccgcuUGuccaGggGAGGCAg -3'
miRNA:   3'- -CGGCGAAGAuUGGu----AC----CuuCUCCGUg -5'
354 3' -52 AC_000011.1 + 18063 0.69 0.570145
Target:  5'- uGCCGCcggUGGCCGUGGcccgcgcgcgacccGGGGGCACc -3'
miRNA:   3'- -CGGCGaagAUUGGUACCu-------------UCUCCGUG- -5'
354 3' -52 AC_000011.1 + 18242 0.73 0.355681
Target:  5'- cGCCGCcgCUGuccACCAgaaGGAggagugaAGAGGCGCg -3'
miRNA:   3'- -CGGCGaaGAU---UGGUa--CCU-------UCUCCGUG- -5'
354 3' -52 AC_000011.1 + 23470 0.69 0.577089
Target:  5'- uGCUGCUUCUcgucGGCgGUGGggGcagauGGCGa -3'
miRNA:   3'- -CGGCGAAGA----UUGgUACCuuCu----CCGUg -5'
354 3' -52 AC_000011.1 + 24406 0.66 0.750293
Target:  5'- gGCCGUggUCcuggUGACCGUGGAgcuGGAGuGCcuGCg -3'
miRNA:   3'- -CGGCGa-AG----AUUGGUACCU---UCUC-CG--UG- -5'
354 3' -52 AC_000011.1 + 26785 0.73 0.338838
Target:  5'- aGCgGCUggUGAUCcgGGGcAGAGGCACa -3'
miRNA:   3'- -CGgCGAagAUUGGuaCCU-UCUCCGUG- -5'
354 3' -52 AC_000011.1 + 30623 0.71 0.475947
Target:  5'- aGCCGCUUCag---GUGGAAGGGGguCu -3'
miRNA:   3'- -CGGCGAAGauuggUACCUUCUCCguG- -5'
354 3' -52 AC_000011.1 + 36124 0.66 0.761255
Target:  5'- uGCUGCUgcUCgguaAGCUAUGGAcgcuGAGGCu- -3'
miRNA:   3'- -CGGCGA--AGa---UUGGUACCUu---CUCCGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.