miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
354 5' -56.3 AC_000011.1 + 12940 0.81 0.058018
Target:  5'- cCGCCCCAGUacgcgcucaGCaCCGAGGAGGAGCGa -3'
miRNA:   3'- aGCGGGGUCGg--------CG-GGUUCUUCUUUGC- -5'
354 5' -56.3 AC_000011.1 + 8210 0.66 0.555236
Target:  5'- -gGCCggAGCUGUCCAGGGuccuGAGACGc -3'
miRNA:   3'- agCGGggUCGGCGGGUUCUu---CUUUGC- -5'
354 5' -56.3 AC_000011.1 + 34012 0.66 0.544218
Target:  5'- aCGCUCCAGCCGaaacucauCgCGGGAAGGAu-- -3'
miRNA:   3'- aGCGGGGUCGGC--------GgGUUCUUCUUugc -5'
354 5' -56.3 AC_000011.1 + 25489 0.66 0.544218
Target:  5'- uUC-CCCCAGgaUGCCCc-GAGGAAACa -3'
miRNA:   3'- -AGcGGGGUCg-GCGGGuuCUUCUUUGc -5'
354 5' -56.3 AC_000011.1 + 22912 0.66 0.544218
Target:  5'- gCGCUagCAGCCGCggCCAGGggGucGCu -3'
miRNA:   3'- aGCGGg-GUCGGCG--GGUUCuuCuuUGc -5'
354 5' -56.3 AC_000011.1 + 23407 0.66 0.533273
Target:  5'- cUGCCCCcaCCGCCgaCGAGAAGcAGCa -3'
miRNA:   3'- aGCGGGGucGGCGG--GUUCUUCuUUGc -5'
354 5' -56.3 AC_000011.1 + 23469 0.66 0.497754
Target:  5'- -nGCCCCgccaccuccgacgcGGCCGUCCcAGAcaugcaAGAGAUGg -3'
miRNA:   3'- agCGGGG--------------UCGGCGGGuUCU------UCUUUGC- -5'
354 5' -56.3 AC_000011.1 + 23455 0.67 0.459246
Target:  5'- cCGCCCC-GCCGCCCAGc-------- -3'
miRNA:   3'- aGCGGGGuCGGCGGGUUcuucuuugc -5'
354 5' -56.3 AC_000011.1 + 10922 0.67 0.449111
Target:  5'- cCGCCgCGGCCGCCgu-GAGcGggGCu -3'
miRNA:   3'- aGCGGgGUCGGCGGguuCUU-CuuUGc -5'
354 5' -56.3 AC_000011.1 + 18237 0.68 0.419471
Target:  5'- gUCGCCgCCGccGCUGUCCAccAGAAGGAGg- -3'
miRNA:   3'- -AGCGG-GGU--CGGCGGGU--UCUUCUUUgc -5'
354 5' -56.3 AC_000011.1 + 15954 0.68 0.400381
Target:  5'- aUCGCCagCAuGuCCGCCCGcggcGAGGGAACGu -3'
miRNA:   3'- -AGCGGg-GU-C-GGCGGGUu---CUUCUUUGC- -5'
354 5' -56.3 AC_000011.1 + 26387 0.75 0.146161
Target:  5'- uUCGCCCUAGCCGCCUccacccaucaucauGAGcaAAGAGAUu -3'
miRNA:   3'- -AGCGGGGUCGGCGGG--------------UUC--UUCUUUGc -5'
354 5' -56.3 AC_000011.1 + 21587 0.74 0.174438
Target:  5'- aUGCUCCAGUCGCCCcAGguGGAACc -3'
miRNA:   3'- aGCGGGGUCGGCGGGuUCuuCUUUGc -5'
354 5' -56.3 AC_000011.1 + 34223 0.72 0.248433
Target:  5'- cCGCCCCGcCCGCCaugCAGcGAAGAGACc -3'
miRNA:   3'- aGCGGGGUcGGCGG---GUU-CUUCUUUGc -5'
354 5' -56.3 AC_000011.1 + 21245 0.69 0.355158
Target:  5'- aUCGUCaacaCGGCCgGCCgCGAGAccGGggGCGa -3'
miRNA:   3'- -AGCGGg---GUCGG-CGG-GUUCU--UCuuUGC- -5'
354 5' -56.3 AC_000011.1 + 13975 0.69 0.363909
Target:  5'- gUGCCCCcGCgguaccuggCGCCUAcGGAGggGCGg -3'
miRNA:   3'- aGCGGGGuCG---------GCGGGUuCUUCuuUGC- -5'
354 5' -56.3 AC_000011.1 + 17898 0.69 0.372809
Target:  5'- aCGCacacggaCgAGCCGCCCccguacGAGGAGGCGg -3'
miRNA:   3'- aGCGg------GgUCGGCGGGuu----CUUCUUUGC- -5'
354 5' -56.3 AC_000011.1 + 11890 0.69 0.381855
Target:  5'- -gGCagCCCAGCCGCCgGGccuuGGAGGCGg -3'
miRNA:   3'- agCG--GGGUCGGCGGgUUcu--UCUUUGC- -5'
354 5' -56.3 AC_000011.1 + 3600 0.68 0.419471
Target:  5'- aCGCaCUC--CCGCCCAgAGggGAGACGc -3'
miRNA:   3'- aGCG-GGGucGGCGGGU-UCuuCUUUGC- -5'
354 5' -56.3 AC_000011.1 + 23155 0.87 0.01962
Target:  5'- cCGCCgCuGCCGCCCAAGAAGAAACc -3'
miRNA:   3'- aGCGGgGuCGGCGGGUUCUUCUUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.