miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
355 5' -61.3 AC_000011.1 + 12639 0.66 0.300974
Target:  5'- -gCAGGGCCUguggggcgugcagGCCCcggucggggaccGCGCGaCGGUGUCg -3'
miRNA:   3'- ugGUCUUGGA-------------UGGG------------CGCGC-GCCGCGG- -5'
355 5' -61.3 AC_000011.1 + 13707 0.66 0.324568
Target:  5'- uGCCuGucguGCC-ACCgGCGUuuacggGCGGCGCUg -3'
miRNA:   3'- -UGGuCu---UGGaUGGgCGCG------CGCCGCGG- -5'
355 5' -61.3 AC_000011.1 + 18174 0.66 0.321448
Target:  5'- uUCAGAguGCuCUGCCaguucgcaugaggGCGgGCGGUGCCc -3'
miRNA:   3'- uGGUCU--UG-GAUGGg------------CGCgCGCCGCGG- -5'
355 5' -61.3 AC_000011.1 + 15503 0.66 0.332468
Target:  5'- cACCgguuGGGGCCUGCgCGCGCccaGCaagauguacggaGGCGCUc -3'
miRNA:   3'- -UGG----UCUUGGAUGgGCGCG---CG------------CCGCGG- -5'
355 5' -61.3 AC_000011.1 + 28399 0.66 0.324568
Target:  5'- uCCAucGCUUacaGCCUGUGCaCGGCGCUa -3'
miRNA:   3'- uGGUcuUGGA---UGGGCGCGcGCCGCGG- -5'
355 5' -61.3 AC_000011.1 + 3688 0.66 0.309192
Target:  5'- uGCC---GCCaGCgCCGUGCGCGGaaugGCCa -3'
miRNA:   3'- -UGGucuUGGaUG-GGCGCGCGCCg---CGG- -5'
355 5' -61.3 AC_000011.1 + 23792 0.66 0.301714
Target:  5'- cGCCuacgaguuGAACCUcuucuCgCCGCGCGUGccccccaaGCGCCa -3'
miRNA:   3'- -UGGu-------CUUGGAu----G-GGCGCGCGC--------CGCGG- -5'
355 5' -61.3 AC_000011.1 + 26458 0.67 0.266419
Target:  5'- cCCAGAuggGCCUGgCCGC---CGGUGCCg -3'
miRNA:   3'- uGGUCU---UGGAUgGGCGcgcGCCGCGG- -5'
355 5' -61.3 AC_000011.1 + 9495 0.67 0.253264
Target:  5'- aACgGGGACCccCCCGgccaccuggagaUGCGCGGCGgCg -3'
miRNA:   3'- -UGgUCUUGGauGGGC------------GCGCGCCGCgG- -5'
355 5' -61.3 AC_000011.1 + 6456 0.67 0.287179
Target:  5'- uGCUGGAcccCCUGCCCcccuucugcucGCGCaaggGCGGaCGCCu -3'
miRNA:   3'- -UGGUCUu--GGAUGGG-----------CGCG----CGCC-GCGG- -5'
355 5' -61.3 AC_000011.1 + 23611 0.67 0.287179
Target:  5'- uGCCAGcuCCUcCUCGUGCuccGCGgGCGUCa -3'
miRNA:   3'- -UGGUCuuGGAuGGGCGCG---CGC-CGCGG- -5'
355 5' -61.3 AC_000011.1 + 9369 0.67 0.273201
Target:  5'- gACCG---UCUGCCCGUGCGC--CGCCg -3'
miRNA:   3'- -UGGUcuuGGAUGGGCGCGCGccGCGG- -5'
355 5' -61.3 AC_000011.1 + 16402 0.67 0.273201
Target:  5'- uGCCGGAGCgCU-CgCCGgGCGUgaagaccacgguGGUGCCg -3'
miRNA:   3'- -UGGUCUUG-GAuG-GGCgCGCG------------CCGCGG- -5'
355 5' -61.3 AC_000011.1 + 30918 0.67 0.280121
Target:  5'- cCCAGuACCgcgACCagcgaGgGCGCGGCuGCUc -3'
miRNA:   3'- uGGUCuUGGa--UGGg----CgCGCGCCG-CGG- -5'
355 5' -61.3 AC_000011.1 + 10249 0.67 0.259774
Target:  5'- uGCUcgAGGACCU---CGCGCcCGGCGCCc -3'
miRNA:   3'- -UGG--UCUUGGAuggGCGCGcGCCGCGG- -5'
355 5' -61.3 AC_000011.1 + 8357 0.67 0.269115
Target:  5'- uACCAucuGGACCU-CCCGCGCGCccuggaaaaacuccuGcaagucaaccgcGCGCCg -3'
miRNA:   3'- -UGGU---CUUGGAuGGGCGCGCG---------------C------------CGCGG- -5'
355 5' -61.3 AC_000011.1 + 8536 0.67 0.259774
Target:  5'- gGCCccGAGCCgccccugccGCCCgGCGCGCGuccuCGCCg -3'
miRNA:   3'- -UGGu-CUUGGa--------UGGG-CGCGCGCc---GCGG- -5'
355 5' -61.3 AC_000011.1 + 7303 0.68 0.222713
Target:  5'- --gAGGAUCuUGCCCGCGCGgGGCa-- -3'
miRNA:   3'- uggUCUUGG-AUGGGCGCGCgCCGcgg -5'
355 5' -61.3 AC_000011.1 + 10963 0.68 0.249424
Target:  5'- cACCAGcuGGCCUuggagagggcgagggGCUgGCGCGCcugggGGCGUCg -3'
miRNA:   3'- -UGGUC--UUGGA---------------UGGgCGCGCG-----CCGCGG- -5'
355 5' -61.3 AC_000011.1 + 22483 0.68 0.240648
Target:  5'- cCCAGAACC-GCUgggggCGCaGCGUGGUGCa -3'
miRNA:   3'- uGGUCUUGGaUGG-----GCG-CGCGCCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.