Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
355 | 5' | -61.3 | AC_000011.1 | + | 2976 | 0.76 | 0.054323 |
Target: 5'- uACCAGAugCUgACCUGCGCGgCGGgaacaGCCa -3' miRNA: 3'- -UGGUCUugGA-UGGGCGCGC-GCCg----CGG- -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 3688 | 0.66 | 0.309192 |
Target: 5'- uGCC---GCCaGCgCCGUGCGCGGaaugGCCa -3' miRNA: 3'- -UGGucuUGGaUG-GGCGCGCGCCg---CGG- -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 3763 | 0.7 | 0.162012 |
Target: 5'- aGCCGGcGCCcauggccauUCCGCGCaCGGCGCUg -3' miRNA: 3'- -UGGUCuUGGau-------GGGCGCGcGCCGCGG- -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 4039 | 0.69 | 0.211397 |
Target: 5'- uCCAGGGCCUA-CCGCGCGCGa---- -3' miRNA: 3'- uGGUCUUGGAUgGGCGCGCGCcgcgg -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 5210 | 0.7 | 0.162012 |
Target: 5'- gACCGGAcCCUGgCUGCGC-UGGaCGCCc -3' miRNA: 3'- -UGGUCUuGGAUgGGCGCGcGCC-GCGG- -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 5360 | 0.69 | 0.185258 |
Target: 5'- uGCU---ACCUGgCCGaCGCGCagGGCGCCg -3' miRNA: 3'- -UGGucuUGGAUgGGC-GCGCG--CCGCGG- -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 6456 | 0.67 | 0.287179 |
Target: 5'- uGCUGGAcccCCUGCCCcccuucugcucGCGCaaggGCGGaCGCCu -3' miRNA: 3'- -UGGUCUu--GGAUGGG-----------CGCG----CGCC-GCGG- -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 7303 | 0.68 | 0.222713 |
Target: 5'- --gAGGAUCuUGCCCGCGCGgGGCa-- -3' miRNA: 3'- uggUCUUGG-AUGGGCGCGCgCCGcgg -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 8211 | 0.68 | 0.240648 |
Target: 5'- cGCCGaggucuGGACCUGCCuCcCGCGCGG-GCUc -3' miRNA: 3'- -UGGU------CUUGGAUGG-GcGCGCGCCgCGG- -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 8357 | 0.67 | 0.269115 |
Target: 5'- uACCAucuGGACCU-CCCGCGCGCccuggaaaaacuccuGcaagucaaccgcGCGCCg -3' miRNA: 3'- -UGGU---CUUGGAuGGGCGCGCG---------------C------------CGCGG- -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 8536 | 0.67 | 0.259774 |
Target: 5'- gGCCccGAGCCgccccugccGCCCgGCGCGCGuccuCGCCg -3' miRNA: 3'- -UGGu-CUUGGa--------UGGG-CGCGCGCc---GCGG- -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 8589 | 0.99 | 0.00092 |
Target: 5'- uACCAGAACCUA-CCGCGCGCGGCGCCg -3' miRNA: 3'- -UGGUCUUGGAUgGGCGCGCGCCGCGG- -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 9369 | 0.67 | 0.273201 |
Target: 5'- gACCG---UCUGCCCGUGCGC--CGCCg -3' miRNA: 3'- -UGGUcuuGGAUGGGCGCGCGccGCGG- -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 9495 | 0.67 | 0.253264 |
Target: 5'- aACgGGGACCccCCCGgccaccuggagaUGCGCGGCGgCg -3' miRNA: 3'- -UGgUCUUGGauGGGC------------GCGCGCCGCgG- -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 10249 | 0.67 | 0.259774 |
Target: 5'- uGCUcgAGGACCU---CGCGCcCGGCGCCc -3' miRNA: 3'- -UGG--UCUUGGAuggGCGCGcGCCGCGG- -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 10963 | 0.68 | 0.249424 |
Target: 5'- cACCAGcuGGCCUuggagagggcgagggGCUgGCGCGCcugggGGCGUCg -3' miRNA: 3'- -UGGUC--UUGGA---------------UGGgCGCGCG-----CCGCGG- -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 11014 | 0.7 | 0.15769 |
Target: 5'- cGCCGGAGCggcACCCGCGCGUgcagaugaaaagGGaCGCUc -3' miRNA: 3'- -UGGUCUUGga-UGGGCGCGCG------------CC-GCGG- -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 11213 | 0.7 | 0.162012 |
Target: 5'- gACgGGGAUCaGCCC-CGCGCGcGCGCa -3' miRNA: 3'- -UGgUCUUGGaUGGGcGCGCGC-CGCGg -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 11297 | 0.76 | 0.057532 |
Target: 5'- gACCAGGuugGCCgcgGCCaCGUGCGCGcGCGCg -3' miRNA: 3'- -UGGUCU---UGGa--UGG-GCGCGCGC-CGCGg -5' |
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355 | 5' | -61.3 | AC_000011.1 | + | 11395 | 0.69 | 0.185258 |
Target: 5'- cCCAGGgucACCUcCUCGCGCGCGaucaggguGCGCa -3' miRNA: 3'- uGGUCU---UGGAuGGGCGCGCGC--------CGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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