miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
355 5' -61.3 AC_000011.1 + 2976 0.76 0.054323
Target:  5'- uACCAGAugCUgACCUGCGCGgCGGgaacaGCCa -3'
miRNA:   3'- -UGGUCUugGA-UGGGCGCGC-GCCg----CGG- -5'
355 5' -61.3 AC_000011.1 + 3688 0.66 0.309192
Target:  5'- uGCC---GCCaGCgCCGUGCGCGGaaugGCCa -3'
miRNA:   3'- -UGGucuUGGaUG-GGCGCGCGCCg---CGG- -5'
355 5' -61.3 AC_000011.1 + 3763 0.7 0.162012
Target:  5'- aGCCGGcGCCcauggccauUCCGCGCaCGGCGCUg -3'
miRNA:   3'- -UGGUCuUGGau-------GGGCGCGcGCCGCGG- -5'
355 5' -61.3 AC_000011.1 + 4039 0.69 0.211397
Target:  5'- uCCAGGGCCUA-CCGCGCGCGa---- -3'
miRNA:   3'- uGGUCUUGGAUgGGCGCGCGCcgcgg -5'
355 5' -61.3 AC_000011.1 + 5210 0.7 0.162012
Target:  5'- gACCGGAcCCUGgCUGCGC-UGGaCGCCc -3'
miRNA:   3'- -UGGUCUuGGAUgGGCGCGcGCC-GCGG- -5'
355 5' -61.3 AC_000011.1 + 5360 0.69 0.185258
Target:  5'- uGCU---ACCUGgCCGaCGCGCagGGCGCCg -3'
miRNA:   3'- -UGGucuUGGAUgGGC-GCGCG--CCGCGG- -5'
355 5' -61.3 AC_000011.1 + 6456 0.67 0.287179
Target:  5'- uGCUGGAcccCCUGCCCcccuucugcucGCGCaaggGCGGaCGCCu -3'
miRNA:   3'- -UGGUCUu--GGAUGGG-----------CGCG----CGCC-GCGG- -5'
355 5' -61.3 AC_000011.1 + 7303 0.68 0.222713
Target:  5'- --gAGGAUCuUGCCCGCGCGgGGCa-- -3'
miRNA:   3'- uggUCUUGG-AUGGGCGCGCgCCGcgg -5'
355 5' -61.3 AC_000011.1 + 8211 0.68 0.240648
Target:  5'- cGCCGaggucuGGACCUGCCuCcCGCGCGG-GCUc -3'
miRNA:   3'- -UGGU------CUUGGAUGG-GcGCGCGCCgCGG- -5'
355 5' -61.3 AC_000011.1 + 8357 0.67 0.269115
Target:  5'- uACCAucuGGACCU-CCCGCGCGCccuggaaaaacuccuGcaagucaaccgcGCGCCg -3'
miRNA:   3'- -UGGU---CUUGGAuGGGCGCGCG---------------C------------CGCGG- -5'
355 5' -61.3 AC_000011.1 + 8536 0.67 0.259774
Target:  5'- gGCCccGAGCCgccccugccGCCCgGCGCGCGuccuCGCCg -3'
miRNA:   3'- -UGGu-CUUGGa--------UGGG-CGCGCGCc---GCGG- -5'
355 5' -61.3 AC_000011.1 + 8589 0.99 0.00092
Target:  5'- uACCAGAACCUA-CCGCGCGCGGCGCCg -3'
miRNA:   3'- -UGGUCUUGGAUgGGCGCGCGCCGCGG- -5'
355 5' -61.3 AC_000011.1 + 9369 0.67 0.273201
Target:  5'- gACCG---UCUGCCCGUGCGC--CGCCg -3'
miRNA:   3'- -UGGUcuuGGAUGGGCGCGCGccGCGG- -5'
355 5' -61.3 AC_000011.1 + 9495 0.67 0.253264
Target:  5'- aACgGGGACCccCCCGgccaccuggagaUGCGCGGCGgCg -3'
miRNA:   3'- -UGgUCUUGGauGGGC------------GCGCGCCGCgG- -5'
355 5' -61.3 AC_000011.1 + 10249 0.67 0.259774
Target:  5'- uGCUcgAGGACCU---CGCGCcCGGCGCCc -3'
miRNA:   3'- -UGG--UCUUGGAuggGCGCGcGCCGCGG- -5'
355 5' -61.3 AC_000011.1 + 10963 0.68 0.249424
Target:  5'- cACCAGcuGGCCUuggagagggcgagggGCUgGCGCGCcugggGGCGUCg -3'
miRNA:   3'- -UGGUC--UUGGA---------------UGGgCGCGCG-----CCGCGG- -5'
355 5' -61.3 AC_000011.1 + 11014 0.7 0.15769
Target:  5'- cGCCGGAGCggcACCCGCGCGUgcagaugaaaagGGaCGCUc -3'
miRNA:   3'- -UGGUCUUGga-UGGGCGCGCG------------CC-GCGG- -5'
355 5' -61.3 AC_000011.1 + 11213 0.7 0.162012
Target:  5'- gACgGGGAUCaGCCC-CGCGCGcGCGCa -3'
miRNA:   3'- -UGgUCUUGGaUGGGcGCGCGC-CGCGg -5'
355 5' -61.3 AC_000011.1 + 11297 0.76 0.057532
Target:  5'- gACCAGGuugGCCgcgGCCaCGUGCGCGcGCGCg -3'
miRNA:   3'- -UGGUCU---UGGa--UGG-GCGCGCGC-CGCGg -5'
355 5' -61.3 AC_000011.1 + 11395 0.69 0.185258
Target:  5'- cCCAGGgucACCUcCUCGCGCGCGaucaggguGCGCa -3'
miRNA:   3'- uGGUCU---UGGAuGGGCGCGCGC--------CGCGg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.