miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
355 5' -61.3 AC_000011.1 + 30918 0.67 0.280121
Target:  5'- cCCAGuACCgcgACCagcgaGgGCGCGGCuGCUc -3'
miRNA:   3'- uGGUCuUGGa--UGGg----CgCGCGCCG-CGG- -5'
355 5' -61.3 AC_000011.1 + 13353 0.69 0.195353
Target:  5'- gGCCgcgaGGGugCUG-CCGCG-GCGGUGCCc -3'
miRNA:   3'- -UGG----UCUugGAUgGGCGCgCGCCGCGG- -5'
355 5' -61.3 AC_000011.1 + 15902 0.69 0.195353
Target:  5'- cGCCAGcGCCggcaggACCCGgagaCGCGCGGCcacgGCg -3'
miRNA:   3'- -UGGUCuUGGa-----UGGGC----GCGCGCCG----CGg -5'
355 5' -61.3 AC_000011.1 + 17080 0.69 0.195353
Target:  5'- cACCucuGAcCCUG-CCGCGCGC-GCGCUa -3'
miRNA:   3'- -UGGu--CUuGGAUgGGCGCGCGcCGCGG- -5'
355 5' -61.3 AC_000011.1 + 24926 0.69 0.211397
Target:  5'- uCCGGAAuCCUGCCCGCcaccugcucGCGCuGC-CCu -3'
miRNA:   3'- uGGUCUU-GGAUGGGCG---------CGCGcCGcGG- -5'
355 5' -61.3 AC_000011.1 + 17243 0.69 0.211397
Target:  5'- cGCCAccACC-ACCgGCG-GCGGCGCg -3'
miRNA:   3'- -UGGUcuUGGaUGGgCGCgCGCCGCGg -5'
355 5' -61.3 AC_000011.1 + 7303 0.68 0.222713
Target:  5'- --gAGGAUCuUGCCCGCGCGgGGCa-- -3'
miRNA:   3'- uggUCUUGG-AUGGGCGCGCgCCGcgg -5'
355 5' -61.3 AC_000011.1 + 10963 0.68 0.249424
Target:  5'- cACCAGcuGGCCUuggagagggcgagggGCUgGCGCGCcugggGGCGUCg -3'
miRNA:   3'- -UGGUC--UUGGA---------------UGGgCGCGCG-----CCGCGG- -5'
355 5' -61.3 AC_000011.1 + 26458 0.67 0.266419
Target:  5'- cCCAGAuggGCCUGgCCGC---CGGUGCCg -3'
miRNA:   3'- uGGUCU---UGGAUgGGCGcgcGCCGCGG- -5'
355 5' -61.3 AC_000011.1 + 24248 0.69 0.180385
Target:  5'- gACCAGGugCUcauCaaGCGCGCGuCGCCc -3'
miRNA:   3'- -UGGUCUugGAu--GggCGCGCGCcGCGG- -5'
355 5' -61.3 AC_000011.1 + 16009 0.7 0.175625
Target:  5'- cACCGGugugcGCgUGCCCGUGCGCaccCGCCc -3'
miRNA:   3'- -UGGUCu----UGgAUGGGCGCGCGcc-GCGG- -5'
355 5' -61.3 AC_000011.1 + 12023 0.7 0.170978
Target:  5'- aGCCAccuCCUGauCCCGCGaugcggGCGGCGCUg -3'
miRNA:   3'- -UGGUcuuGGAU--GGGCGCg-----CGCCGCGG- -5'
355 5' -61.3 AC_000011.1 + 2976 0.76 0.054323
Target:  5'- uACCAGAugCUgACCUGCGCGgCGGgaacaGCCa -3'
miRNA:   3'- -UGGUCUugGA-UGGGCGCGC-GCCg----CGG- -5'
355 5' -61.3 AC_000011.1 + 18066 0.74 0.07873
Target:  5'- cGCCGGuGGCCgugGCCCGCGCGCGaC-CCg -3'
miRNA:   3'- -UGGUC-UUGGa--UGGGCGCGCGCcGcGG- -5'
355 5' -61.3 AC_000011.1 + 26723 0.73 0.093263
Target:  5'- cUCAGGuguCCaGCUgGCGgGCGGCGCCa -3'
miRNA:   3'- uGGUCUu--GGaUGGgCGCgCGCCGCGG- -5'
355 5' -61.3 AC_000011.1 + 15750 0.71 0.149357
Target:  5'- cGCCGGuAC--GCCCGCGCcaagagccggcgGCGGCGCa -3'
miRNA:   3'- -UGGUCuUGgaUGGGCGCG------------CGCCGCGg -5'
355 5' -61.3 AC_000011.1 + 21383 0.7 0.153472
Target:  5'- uACgAGGGCCUGCUgCGC-CGCaGCGCCc -3'
miRNA:   3'- -UGgUCUUGGAUGG-GCGcGCGcCGCGG- -5'
355 5' -61.3 AC_000011.1 + 11014 0.7 0.15769
Target:  5'- cGCCGGAGCggcACCCGCGCGUgcagaugaaaagGGaCGCUc -3'
miRNA:   3'- -UGGUCUUGga-UGGGCGCGCG------------CC-GCGG- -5'
355 5' -61.3 AC_000011.1 + 11213 0.7 0.162012
Target:  5'- gACgGGGAUCaGCCC-CGCGCGcGCGCa -3'
miRNA:   3'- -UGgUCUUGGaUGGGcGCGCGC-CGCGg -5'
355 5' -61.3 AC_000011.1 + 16548 0.7 0.162012
Target:  5'- -gCAGGugCUGCcgaCCGCgGCGCcGCGCCg -3'
miRNA:   3'- ugGUCUugGAUG---GGCG-CGCGcCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.