miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
356 3' -62.7 AC_000011.1 + 3825 0.66 0.27443
Target:  5'- uGACCcaGCGCCU-GGGCGa-GCUGACCc -3'
miRNA:   3'- -CUGG--UGCGGAcCCCGUacCGGCUGGc -5'
356 3' -62.7 AC_000011.1 + 9867 0.66 0.235772
Target:  5'- aGCCGCG-CUGGGGC-UGGaCGAgCGc -3'
miRNA:   3'- cUGGUGCgGACCCCGuACCgGCUgGC- -5'
356 3' -62.7 AC_000011.1 + 24799 0.67 0.218215
Target:  5'- cACCAcCGCCUcGGaCcUGGCCGACCu -3'
miRNA:   3'- cUGGU-GCGGAcCCcGuACCGGCUGGc -5'
356 3' -62.7 AC_000011.1 + 8466 0.67 0.218215
Target:  5'- gGACgCGCGCCgGGcGGCAgGGgCGGCuCGg -3'
miRNA:   3'- -CUG-GUGCGGaCC-CCGUaCCgGCUG-GC- -5'
356 3' -62.7 AC_000011.1 + 24677 0.67 0.212616
Target:  5'- uGCCACaCCUGgcagacGGGCAUGGgCGugUGg -3'
miRNA:   3'- cUGGUGcGGAC------CCCGUACCgGCugGC- -5'
356 3' -62.7 AC_000011.1 + 10989 0.68 0.186445
Target:  5'- gGGCUggcGCGCCUgGGGGCGUcGUCG-CCGg -3'
miRNA:   3'- -CUGG---UGCGGA-CCCCGUAcCGGCuGGC- -5'
356 3' -62.7 AC_000011.1 + 13621 0.68 0.186445
Target:  5'- gGGCCACgaGCC-GGGGCAgcGCCGcCCGu -3'
miRNA:   3'- -CUGGUG--CGGaCCCCGUacCGGCuGGC- -5'
356 3' -62.7 AC_000011.1 + 23529 0.69 0.158824
Target:  5'- cGGCCGCGUCggaGGuGGCggGGCUGGgCGg -3'
miRNA:   3'- -CUGGUGCGGa--CC-CCGuaCCGGCUgGC- -5'
356 3' -62.7 AC_000011.1 + 12527 0.71 0.108249
Target:  5'- -uCCugGCCccGGGGCAcguUGGCgGGCUGg -3'
miRNA:   3'- cuGGugCGGa-CCCCGU---ACCGgCUGGC- -5'
356 3' -62.7 AC_000011.1 + 21259 0.73 0.081827
Target:  5'- cGGCCGCGagaCCgGGGGCGagcacUGGCUGGCCu -3'
miRNA:   3'- -CUGGUGC---GGaCCCCGU-----ACCGGCUGGc -5'
356 3' -62.7 AC_000011.1 + 9807 1.07 0.000153
Target:  5'- gGACCACGCCUGGGGCAUGGCCGACCGu -3'
miRNA:   3'- -CUGGUGCGGACCCCGUACCGGCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.