Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
357 | 3' | -56.1 | AC_000011.1 | + | 999 | 0.68 | 0.420233 |
Target: 5'- cCUGCUcguCCuCAUCAUcGCUCGGGGGCa -3' miRNA: 3'- cGAUGGu--GGcGUGGUA-CGAGCUCCUG- -5' |
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357 | 3' | -56.1 | AC_000011.1 | + | 3686 | 0.74 | 0.174234 |
Target: 5'- uCUGCCGCCaGCGCCGUGCgCGGaauggccauGGGCg -3' miRNA: 3'- cGAUGGUGG-CGUGGUACGaGCU---------CCUG- -5' |
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357 | 3' | -56.1 | AC_000011.1 | + | 4111 | 0.72 | 0.255139 |
Target: 5'- aGCU-CCAUUGCAgggccUCGUGCUCGGGGGu -3' miRNA: 3'- -CGAuGGUGGCGU-----GGUACGAGCUCCUg -5' |
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357 | 3' | -56.1 | AC_000011.1 | + | 4877 | 0.67 | 0.480916 |
Target: 5'- aCUACCACCuGCAgCcgGUcaUCGGGGuCa -3' miRNA: 3'- cGAUGGUGG-CGUgGuaCG--AGCUCCuG- -5' |
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357 | 3' | -56.1 | AC_000011.1 | + | 5719 | 0.75 | 0.143019 |
Target: 5'- --gACCGCgGCACaccGCUCGAGGACc -3' miRNA: 3'- cgaUGGUGgCGUGguaCGAGCUCCUG- -5' |
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357 | 3' | -56.1 | AC_000011.1 | + | 6702 | 0.69 | 0.382444 |
Target: 5'- cGCUGCUACCcCACCuacaucgGCauccUCGAGGAg -3' miRNA: 3'- -CGAUGGUGGcGUGGua-----CG----AGCUCCUg -5' |
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357 | 3' | -56.1 | AC_000011.1 | + | 10165 | 0.66 | 0.523644 |
Target: 5'- aGCgGCCAUCGCuCgGUGg-CGGGGGCg -3' miRNA: 3'- -CGaUGGUGGCGuGgUACgaGCUCCUG- -5' |
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357 | 3' | -56.1 | AC_000011.1 | + | 10265 | 1.1 | 0.00037 |
Target: 5'- gGCUACCACCGCACCAUGCUCGAGGACc -3' miRNA: 3'- -CGAUGGUGGCGUGGUACGAGCUCCUG- -5' |
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357 | 3' | -56.1 | AC_000011.1 | + | 11961 | 0.66 | 0.555508 |
Target: 5'- cCUGCCGCCGCcuccaagGCCcgGCggcuGGGCu -3' miRNA: 3'- cGAUGGUGGCG-------UGGuaCGagcuCCUG- -5' |
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357 | 3' | -56.1 | AC_000011.1 | + | 12792 | 0.71 | 0.290759 |
Target: 5'- uGCUGCCGCUGU-CCGUGaa-GGGGGCc -3' miRNA: 3'- -CGAUGGUGGCGuGGUACgagCUCCUG- -5' |
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357 | 3' | -56.1 | AC_000011.1 | + | 13364 | 0.68 | 0.430027 |
Target: 5'- uGCUGCCGCgGCG--GUGCcCGAGGcCg -3' miRNA: 3'- -CGAUGGUGgCGUggUACGaGCUCCuG- -5' |
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357 | 3' | -56.1 | AC_000011.1 | + | 13417 | 0.68 | 0.443963 |
Target: 5'- gGC-ACCGCCGCggcagcacccucgcgGCCGgacagcGC-CGAGGACg -3' miRNA: 3'- -CGaUGGUGGCG---------------UGGUa-----CGaGCUCCUG- -5' |
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357 | 3' | -56.1 | AC_000011.1 | + | 13991 | 0.66 | 0.516055 |
Target: 5'- gGCUgcaucGCCGCCGcCGCCAUcgccugcugcaucacGCUCucguacgagggagGAGGACc -3' miRNA: 3'- -CGA-----UGGUGGC-GUGGUA---------------CGAG-------------CUCCUG- -5' |
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357 | 3' | -56.1 | AC_000011.1 | + | 15671 | 0.67 | 0.502081 |
Target: 5'- uGC-GCgACCGCACgCGgccCUUGAGGGCg -3' miRNA: 3'- -CGaUGgUGGCGUG-GUac-GAGCUCCUG- -5' |
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357 | 3' | -56.1 | AC_000011.1 | + | 16553 | 0.75 | 0.160172 |
Target: 5'- uGCUGCCgaccgcggcGCCGCGCCGgggguucaaGCgCGAGGGCg -3' miRNA: 3'- -CGAUGG---------UGGCGUGGUa--------CGaGCUCCUG- -5' |
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357 | 3' | -56.1 | AC_000011.1 | + | 17189 | 0.71 | 0.276062 |
Target: 5'- gGCUACCgaggaagaaaACCGCGCCGUagaagGCUggCGGGGAa -3' miRNA: 3'- -CGAUGG----------UGGCGUGGUA-----CGA--GCUCCUg -5' |
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357 | 3' | -56.1 | AC_000011.1 | + | 18484 | 0.68 | 0.401055 |
Target: 5'- gGCUGaCGCUGCGCUucGUGCccguggaccgCGAGGACa -3' miRNA: 3'- -CGAUgGUGGCGUGG--UACGa---------GCUCCUG- -5' |
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357 | 3' | -56.1 | AC_000011.1 | + | 19863 | 0.77 | 0.107253 |
Target: 5'- gGCUgcGCUACCGCuCCAUGCUCcuGGGCa -3' miRNA: 3'- -CGA--UGGUGGCGuGGUACGAGcuCCUG- -5' |
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357 | 3' | -56.1 | AC_000011.1 | + | 20566 | 0.68 | 0.391677 |
Target: 5'- gGCUACCAggGCuucuaCGUGCcCGAGGGCu -3' miRNA: 3'- -CGAUGGUggCGug---GUACGaGCUCCUG- -5' |
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357 | 3' | -56.1 | AC_000011.1 | + | 20725 | 0.69 | 0.364416 |
Target: 5'- gGCUACCucgcGCC-CACCAUGCgCcAGGGCc -3' miRNA: 3'- -CGAUGG----UGGcGUGGUACGaGcUCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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