miRNA display CGI


Results 1 - 20 of 33 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
357 3' -56.1 AC_000011.1 + 19863 0.77 0.107253
Target:  5'- gGCUgcGCUACCGCuCCAUGCUCcuGGGCa -3'
miRNA:   3'- -CGA--UGGUGGCGuGGUACGAGcuCCUG- -5'
357 3' -56.1 AC_000011.1 + 10165 0.66 0.523644
Target:  5'- aGCgGCCAUCGCuCgGUGg-CGGGGGCg -3'
miRNA:   3'- -CGaUGGUGGCGuGgUACgaGCUCCUG- -5'
357 3' -56.1 AC_000011.1 + 25046 0.67 0.470497
Target:  5'- cCUACCACuCGgA-CGUGaUCGAGGACg -3'
miRNA:   3'- cGAUGGUG-GCgUgGUACgAGCUCCUG- -5'
357 3' -56.1 AC_000011.1 + 21393 0.68 0.430027
Target:  5'- uGCUgcGCCGCaGCGCCcugGCcacCGAGGACc -3'
miRNA:   3'- -CGA--UGGUGgCGUGGua-CGa--GCUCCUG- -5'
357 3' -56.1 AC_000011.1 + 13364 0.68 0.430027
Target:  5'- uGCUGCCGCgGCG--GUGCcCGAGGcCg -3'
miRNA:   3'- -CGAUGGUGgCGUggUACGaGCUCCuG- -5'
357 3' -56.1 AC_000011.1 + 27147 0.68 0.401055
Target:  5'- aCUGCCGCCGCuuCCGcUGCuUCGcucGGGAUc -3'
miRNA:   3'- cGAUGGUGGCGu-GGU-ACG-AGC---UCCUG- -5'
357 3' -56.1 AC_000011.1 + 23743 0.68 0.401055
Target:  5'- cGCUGCUcgACCGCACCGaggUGCcccucagcgUgGAGGAg -3'
miRNA:   3'- -CGAUGG--UGGCGUGGU---ACG---------AgCUCCUg -5'
357 3' -56.1 AC_000011.1 + 18484 0.68 0.401055
Target:  5'- gGCUGaCGCUGCGCUucGUGCccguggaccgCGAGGACa -3'
miRNA:   3'- -CGAUgGUGGCGUGG--UACGa---------GCUCCUG- -5'
357 3' -56.1 AC_000011.1 + 20566 0.68 0.391677
Target:  5'- gGCUACCAggGCuucuaCGUGCcCGAGGGCu -3'
miRNA:   3'- -CGAUGGUggCGug---GUACGaGCUCCUG- -5'
357 3' -56.1 AC_000011.1 + 20725 0.69 0.364416
Target:  5'- gGCUACCucgcGCC-CACCAUGCgCcAGGGCc -3'
miRNA:   3'- -CGAUGG----UGGcGUGGUACGaGcUCCUG- -5'
357 3' -56.1 AC_000011.1 + 16553 0.75 0.160172
Target:  5'- uGCUGCCgaccgcggcGCCGCGCCGgggguucaaGCgCGAGGGCg -3'
miRNA:   3'- -CGAUGG---------UGGCGUGGUa--------CGaGCUCCUG- -5'
357 3' -56.1 AC_000011.1 + 25265 0.74 0.164742
Target:  5'- cCUACUugCGCAaguUCGUGCcCGAGGACu -3'
miRNA:   3'- cGAUGGugGCGU---GGUACGaGCUCCUG- -5'
357 3' -56.1 AC_000011.1 + 3686 0.74 0.174234
Target:  5'- uCUGCCGCCaGCGCCGUGCgCGGaauggccauGGGCg -3'
miRNA:   3'- cGAUGGUGG-CGUGGUACGaGCU---------CCUG- -5'
357 3' -56.1 AC_000011.1 + 33821 0.73 0.200119
Target:  5'- cGCUGCCGCCGCcgcuCCGucaagcugcUGCUCaGGGGGu -3'
miRNA:   3'- -CGAUGGUGGCGu---GGU---------ACGAG-CUCCUg -5'
357 3' -56.1 AC_000011.1 + 4111 0.72 0.255139
Target:  5'- aGCU-CCAUUGCAgggccUCGUGCUCGGGGGu -3'
miRNA:   3'- -CGAuGGUGGCGU-----GGUACGAGCUCCUg -5'
357 3' -56.1 AC_000011.1 + 17189 0.71 0.276062
Target:  5'- gGCUACCgaggaagaaaACCGCGCCGUagaagGCUggCGGGGAa -3'
miRNA:   3'- -CGAUGG----------UGGCGUGGUA-----CGA--GCUCCUg -5'
357 3' -56.1 AC_000011.1 + 24749 0.66 0.556617
Target:  5'- uGCUGCCACaCGC-CCAUGCcCGucugccAGGu- -3'
miRNA:   3'- -CGAUGGUG-GCGuGGUACGaGC------UCCug -5'
357 3' -56.1 AC_000011.1 + 33968 0.76 0.123944
Target:  5'- uGCUGcgcCCGCCGCACCAgacgacugaUGCU-GAGGGCc -3'
miRNA:   3'- -CGAU---GGUGGCGUGGU---------ACGAgCUCCUG- -5'
357 3' -56.1 AC_000011.1 + 5719 0.75 0.143019
Target:  5'- --gACCGCgGCACaccGCUCGAGGACc -3'
miRNA:   3'- cgaUGGUGgCGUGguaCGAGCUCCUG- -5'
357 3' -56.1 AC_000011.1 + 12792 0.71 0.290759
Target:  5'- uGCUGCCGCUGU-CCGUGaa-GGGGGCc -3'
miRNA:   3'- -CGAUGGUGGCGuGGUACgagCUCCUG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.