miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
357 3' -56.1 AC_000011.1 + 24390 0.69 0.382444
Target:  5'- --aGCCACCGgGCCAgcUGCUCGucgcugaccacGGGCu -3'
miRNA:   3'- cgaUGGUGGCgUGGU--ACGAGCu----------CCUG- -5'
357 3' -56.1 AC_000011.1 + 20725 0.69 0.364416
Target:  5'- gGCUACCucgcGCC-CACCAUGCgCcAGGGCc -3'
miRNA:   3'- -CGAUGG----UGGcGUGGUACGaGcUCCUG- -5'
357 3' -56.1 AC_000011.1 + 12792 0.71 0.290759
Target:  5'- uGCUGCCGCUGU-CCGUGaa-GGGGGCc -3'
miRNA:   3'- -CGAUGGUGGCGuGGUACgagCUCCUG- -5'
357 3' -56.1 AC_000011.1 + 17189 0.71 0.276062
Target:  5'- gGCUACCgaggaagaaaACCGCGCCGUagaagGCUggCGGGGAa -3'
miRNA:   3'- -CGAUGG----------UGGCGUGGUA-----CGA--GCUCCUg -5'
357 3' -56.1 AC_000011.1 + 4111 0.72 0.255139
Target:  5'- aGCU-CCAUUGCAgggccUCGUGCUCGGGGGu -3'
miRNA:   3'- -CGAuGGUGGCGU-----GGUACGAGCUCCUg -5'
357 3' -56.1 AC_000011.1 + 33821 0.73 0.200119
Target:  5'- cGCUGCCGCCGCcgcuCCGucaagcugcUGCUCaGGGGGu -3'
miRNA:   3'- -CGAUGGUGGCGu---GGU---------ACGAG-CUCCUg -5'
357 3' -56.1 AC_000011.1 + 3686 0.74 0.174234
Target:  5'- uCUGCCGCCaGCGCCGUGCgCGGaauggccauGGGCg -3'
miRNA:   3'- cGAUGGUGG-CGUGGUACGaGCU---------CCUG- -5'
357 3' -56.1 AC_000011.1 + 25265 0.74 0.164742
Target:  5'- cCUACUugCGCAaguUCGUGCcCGAGGACu -3'
miRNA:   3'- cGAUGGugGCGU---GGUACGaGCUCCUG- -5'
357 3' -56.1 AC_000011.1 + 16553 0.75 0.160172
Target:  5'- uGCUGCCgaccgcggcGCCGCGCCGgggguucaaGCgCGAGGGCg -3'
miRNA:   3'- -CGAUGG---------UGGCGUGGUa--------CGaGCUCCUG- -5'
357 3' -56.1 AC_000011.1 + 5719 0.75 0.143019
Target:  5'- --gACCGCgGCACaccGCUCGAGGACc -3'
miRNA:   3'- cgaUGGUGgCGUGguaCGAGCUCCUG- -5'
357 3' -56.1 AC_000011.1 + 33968 0.76 0.123944
Target:  5'- uGCUGcgcCCGCCGCACCAgacgacugaUGCU-GAGGGCc -3'
miRNA:   3'- -CGAU---GGUGGCGUGGU---------ACGAgCUCCUG- -5'
357 3' -56.1 AC_000011.1 + 19863 0.77 0.107253
Target:  5'- gGCUgcGCUACCGCuCCAUGCUCcuGGGCa -3'
miRNA:   3'- -CGA--UGGUGGCGuGGUACGAGcuCCUG- -5'
357 3' -56.1 AC_000011.1 + 10265 1.1 0.00037
Target:  5'- gGCUACCACCGCACCAUGCUCGAGGACc -3'
miRNA:   3'- -CGAUGGUGGCGUGGUACGAGCUCCUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.