miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
357 5' -64.5 AC_000011.1 + 6396 0.67 0.182612
Target:  5'- -aGCCCCUGCgCGgCGAG--GUGGCCa -3'
miRNA:   3'- cgCGGGGGCG-GUgGCUCgcUACCGGc -5'
357 5' -64.5 AC_000011.1 + 8462 0.68 0.147555
Target:  5'- uCGCCCCaGCCGCCcaagaagaaacggGGGaCGGUGGUCa -3'
miRNA:   3'- cGCGGGGgCGGUGG-------------CUC-GCUACCGGc -5'
357 5' -64.5 AC_000011.1 + 8527 0.7 0.107101
Target:  5'- cCGCCCCUGCCGCCcGGCGcgcguccucGCCGc -3'
miRNA:   3'- cGCGGGGGCGGUGGcUCGCuac------CGGC- -5'
357 5' -64.5 AC_000011.1 + 8561 0.71 0.090888
Target:  5'- cGUGCCCCUGCCGCCccuGCcuccgGGCCc -3'
miRNA:   3'- -CGCGGGGGCGGUGGcu-CGcua--CCGGc -5'
357 5' -64.5 AC_000011.1 + 8782 0.69 0.129089
Target:  5'- -gGUCUCCGCgGCCGGcGCGcuccacgGUGGCCGc -3'
miRNA:   3'- cgCGGGGGCGgUGGCU-CGC-------UACCGGC- -5'
357 5' -64.5 AC_000011.1 + 9363 0.67 0.173325
Target:  5'- cUGCCCgugCGCCGCCG-GCGAcgcaGGCCc -3'
miRNA:   3'- cGCGGGg--GCGGUGGCuCGCUa---CCGGc -5'
357 5' -64.5 AC_000011.1 + 10229 1.08 0.000094
Target:  5'- gGCGCCCCCGCCACCGAGCGAUGGCCGc -3'
miRNA:   3'- -CGCGGGGGCGGUGGCUCGCUACCGGC- -5'
357 5' -64.5 AC_000011.1 + 10922 0.7 0.107101
Target:  5'- cCGCCgCgGCCGCCguGAGCGG-GGCUGg -3'
miRNA:   3'- cGCGGgGgCGGUGG--CUCGCUaCCGGC- -5'
357 5' -64.5 AC_000011.1 + 11191 0.7 0.11938
Target:  5'- cGCaGCUCCCGCC-CCGcGUGGaaccgGGCCGc -3'
miRNA:   3'- -CG-CGGGGGCGGuGGCuCGCUa----CCGGC- -5'
357 5' -64.5 AC_000011.1 + 11477 0.66 0.218651
Target:  5'- gGCGCUgCUGaauauCACCGAGCccGAgGGCCGc -3'
miRNA:   3'- -CGCGGgGGCg----GUGGCUCG--CUaCCGGC- -5'
357 5' -64.5 AC_000011.1 + 12092 0.66 0.207774
Target:  5'- aGCGCCgCCCGCaucgCGGGaucaggaGGUGGCUGu -3'
miRNA:   3'- -CGCGG-GGGCGgug-GCUCg------CUACCGGC- -5'
357 5' -64.5 AC_000011.1 + 12326 0.68 0.168841
Target:  5'- cCGgCCUCGUCGCCGcG-GAUGGCCu -3'
miRNA:   3'- cGCgGGGGCGGUGGCuCgCUACCGGc -5'
357 5' -64.5 AC_000011.1 + 12511 0.66 0.215337
Target:  5'- aGCGCCCUgCGCCugauggugACCGAggugccccagaGCGAgguguaccaguccgGGCCGg -3'
miRNA:   3'- -CGCGGGG-GCGG--------UGGCU-----------CGCUa-------------CCGGC- -5'
357 5' -64.5 AC_000011.1 + 13183 0.66 0.218651
Target:  5'- -gGCUCCCGCCGCCGggguucuacacgGGCGA-GuaCGa -3'
miRNA:   3'- cgCGGGGGCGGUGGC------------UCGCUaCcgGC- -5'
357 5' -64.5 AC_000011.1 + 13974 0.66 0.235875
Target:  5'- cGUGCCCCCGCggUACCuGGCGccuacggaggGGCgGa -3'
miRNA:   3'- -CGCGGGGGCG--GUGGcUCGCua--------CCGgC- -5'
357 5' -64.5 AC_000011.1 + 15631 0.7 0.119058
Target:  5'- cGCGCaCCaCCGUCgacgacgugaucgACCaGGUGGUGGCCGa -3'
miRNA:   3'- -CGCG-GG-GGCGG-------------UGGcUCGCUACCGGC- -5'
357 5' -64.5 AC_000011.1 + 15757 0.66 0.218651
Target:  5'- aCGCCCgCGCCaagaGCCG-GCGgcGGCg- -3'
miRNA:   3'- cGCGGGgGCGG----UGGCuCGCuaCCGgc -5'
357 5' -64.5 AC_000011.1 + 15804 0.66 0.215337
Target:  5'- aGCaCCCCCGCCAUgcgcgCGGcGCGAgccuugcugcgcagGGCCa -3'
miRNA:   3'- -CGcGGGGGCGGUG-----GCU-CGCUa-------------CCGGc -5'
357 5' -64.5 AC_000011.1 + 15844 0.82 0.01295
Target:  5'- gGUGCUCCggUGCCGCCGGGCGAUGcGCCGc -3'
miRNA:   3'- -CGCGGGG--GCGGUGGCUCGCUAC-CGGC- -5'
357 5' -64.5 AC_000011.1 + 15926 0.7 0.116193
Target:  5'- cGCGUCUggCCGCC-CUGAGC-AUGGCCc -3'
miRNA:   3'- -CGCGGG--GGCGGuGGCUCGcUACCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.