miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
357 5' -64.5 AC_000011.1 + 8462 0.68 0.147555
Target:  5'- uCGCCCCaGCCGCCcaagaagaaacggGGGaCGGUGGUCa -3'
miRNA:   3'- cGCGGGGgCGGUGG-------------CUC-GCUACCGGc -5'
357 5' -64.5 AC_000011.1 + 8782 0.69 0.129089
Target:  5'- -gGUCUCCGCgGCCGGcGCGcuccacgGUGGCCGc -3'
miRNA:   3'- cgCGGGGGCGgUGGCU-CGC-------UACCGGC- -5'
357 5' -64.5 AC_000011.1 + 27004 0.69 0.122648
Target:  5'- aGUGCCgaUGCCAcCCGAGCGG-GGCUGc -3'
miRNA:   3'- -CGCGGggGCGGU-GGCUCGCUaCCGGC- -5'
357 5' -64.5 AC_000011.1 + 11191 0.7 0.11938
Target:  5'- cGCaGCUCCCGCC-CCGcGUGGaaccgGGCCGc -3'
miRNA:   3'- -CG-CGGGGGCGGuGGCuCGCUa----CCGGC- -5'
357 5' -64.5 AC_000011.1 + 15631 0.7 0.119058
Target:  5'- cGCGCaCCaCCGUCgacgacgugaucgACCaGGUGGUGGCCGa -3'
miRNA:   3'- -CGCG-GG-GGCGG-------------UGGcUCGCUACCGGC- -5'
357 5' -64.5 AC_000011.1 + 15926 0.7 0.116193
Target:  5'- cGCGUCUggCCGCC-CUGAGC-AUGGCCc -3'
miRNA:   3'- -CGCGGG--GGCGGuGGCUCGcUACCGGc -5'
357 5' -64.5 AC_000011.1 + 17965 0.7 0.116193
Target:  5'- cGCGCCCCUgGCCACCGGG-Gu--GCUGa -3'
miRNA:   3'- -CGCGGGGG-CGGUGGCUCgCuacCGGC- -5'
357 5' -64.5 AC_000011.1 + 10922 0.7 0.107101
Target:  5'- cCGCCgCgGCCGCCguGAGCGG-GGCUGg -3'
miRNA:   3'- cGCGGgGgCGGUGG--CUCGCUaCCGGC- -5'
357 5' -64.5 AC_000011.1 + 8527 0.7 0.107101
Target:  5'- cCGCCCCUGCCGCCcGGCGcgcguccucGCCGc -3'
miRNA:   3'- cGCGGGGGCGGUGGcUCGCuac------CGGC- -5'
357 5' -64.5 AC_000011.1 + 22427 0.71 0.096016
Target:  5'- uGCGCCCCCaGCgGuuCUGGGUGAucuUGGCCc -3'
miRNA:   3'- -CGCGGGGG-CGgU--GGCUCGCU---ACCGGc -5'
357 5' -64.5 AC_000011.1 + 8561 0.71 0.090888
Target:  5'- cGUGCCCCUGCCGCCccuGCcuccgGGCCc -3'
miRNA:   3'- -CGCGGGGGCGGUGGcu-CGcua--CCGGc -5'
357 5' -64.5 AC_000011.1 + 17303 0.72 0.081404
Target:  5'- cGCGCCgCCGCCGgUG-GUGGUGGCg- -3'
miRNA:   3'- -CGCGGgGGCGGUgGCuCGCUACCGgc -5'
357 5' -64.5 AC_000011.1 + 34741 0.73 0.070873
Target:  5'- aGCGCCgagaCCGCCGCCG-GCGAUcGGUg- -3'
miRNA:   3'- -CGCGGg---GGCGGUGGCuCGCUA-CCGgc -5'
357 5' -64.5 AC_000011.1 + 16022 0.74 0.058307
Target:  5'- cGUuCCCUCGCCGCgGgcgggacaugcuGGCGAUGGCCGc -3'
miRNA:   3'- -CGcGGGGGCGGUGgC------------UCGCUACCGGC- -5'
357 5' -64.5 AC_000011.1 + 21404 0.74 0.055132
Target:  5'- aGCGCCCUgGCCACCGAG-GAccGCUGc -3'
miRNA:   3'- -CGCGGGGgCGGUGGCUCgCUacCGGC- -5'
357 5' -64.5 AC_000011.1 + 23243 0.75 0.047911
Target:  5'- cGgGCUCUCGCCGCCGcgacuuGGCGgAUGGCUGg -3'
miRNA:   3'- -CgCGGGGGCGGUGGC------UCGC-UACCGGC- -5'
357 5' -64.5 AC_000011.1 + 18057 0.79 0.02229
Target:  5'- -aGCCCCUGCCGCCGguGGCcGUGGCCc -3'
miRNA:   3'- cgCGGGGGCGGUGGC--UCGcUACCGGc -5'
357 5' -64.5 AC_000011.1 + 15844 0.82 0.01295
Target:  5'- gGUGCUCCggUGCCGCCGGGCGAUGcGCCGc -3'
miRNA:   3'- -CGCGGGG--GCGGUGGCUCGCUAC-CGGC- -5'
357 5' -64.5 AC_000011.1 + 10229 1.08 0.000094
Target:  5'- gGCGCCCCCGCCACCGAGCGAUGGCCGc -3'
miRNA:   3'- -CGCGGGGGCGGUGGCUCGCUACCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.