miRNA display CGI


Results 1 - 20 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3574 3' -60.5 NC_001650.1 + 45116 0.66 0.758607
Target:  5'- gCGGCCGcgguucccaGGGAGCucGCaacCCAGGCg -3'
miRNA:   3'- -GCCGGUua-------CCCUCGu-CGgacGGUCCG- -5'
3574 3' -60.5 NC_001650.1 + 3251 0.66 0.758607
Target:  5'- gCGGCCAucuUGGaucccCAuGCCUGgCAGGCu -3'
miRNA:   3'- -GCCGGUu--ACCcuc--GU-CGGACgGUCCG- -5'
3574 3' -60.5 NC_001650.1 + 74745 0.66 0.758607
Target:  5'- gGGCCAcgGUGGcGGCcucCCUGCCAaacaccgggGGCa -3'
miRNA:   3'- gCCGGU--UACCcUCGuc-GGACGGU---------CCG- -5'
3574 3' -60.5 NC_001650.1 + 136648 0.66 0.758607
Target:  5'- aGGCUcc-GcGGGCAGagUGCCAGGCg -3'
miRNA:   3'- gCCGGuuaCcCUCGUCggACGGUCCG- -5'
3574 3' -60.5 NC_001650.1 + 169958 0.66 0.758607
Target:  5'- gCGGCCAucuUGGaucccCAuGCCUGgCAGGCu -3'
miRNA:   3'- -GCCGGUu--ACCcuc--GU-CGGACgGUCCG- -5'
3574 3' -60.5 NC_001650.1 + 109459 0.66 0.758607
Target:  5'- gCGGCCu---GGAG-AGgCUGCuCAGGCu -3'
miRNA:   3'- -GCCGGuuacCCUCgUCgGACG-GUCCG- -5'
3574 3' -60.5 NC_001650.1 + 136675 0.66 0.758607
Target:  5'- gGGCUGAUGcGGGCccugugcgagGGCCUGCgCguGGGCg -3'
miRNA:   3'- gCCGGUUACcCUCG----------UCGGACG-G--UCCG- -5'
3574 3' -60.5 NC_001650.1 + 22887 0.66 0.755829
Target:  5'- aCGGCCGccaggAUGGaGGcCAGCCgccggccgcugucgUGCgAGGCg -3'
miRNA:   3'- -GCCGGU-----UACCcUC-GUCGG--------------ACGgUCCG- -5'
3574 3' -60.5 NC_001650.1 + 25037 0.66 0.752111
Target:  5'- gCGGCCucgauguucuacGGGAGCgacguggccagcgGGCCcGCCAuGGCc -3'
miRNA:   3'- -GCCGGuua---------CCCUCG-------------UCGGaCGGU-CCG- -5'
3574 3' -60.5 NC_001650.1 + 3690 0.66 0.750246
Target:  5'- uGGCCcuuaaGGGGcacaugguccccGCcgccauguucuaaauGCCUGCCAGGCa -3'
miRNA:   3'- gCCGGuua--CCCU------------CGu--------------CGGACGGUCCG- -5'
3574 3' -60.5 NC_001650.1 + 170397 0.66 0.750246
Target:  5'- uGGCCcuuaaGGGGcacaugguccccGCcgccauguucuaaauGCCUGCCAGGCa -3'
miRNA:   3'- gCCGGuua--CCCU------------CGu--------------CGGACGGUCCG- -5'
3574 3' -60.5 NC_001650.1 + 68652 0.66 0.749312
Target:  5'- aGGCUgcucaccgGGGcgaAGCuGUCUGCCAGGg -3'
miRNA:   3'- gCCGGuua-----CCC---UCGuCGGACGGUCCg -5'
3574 3' -60.5 NC_001650.1 + 5425 0.66 0.749312
Target:  5'- -aGCCAAUGGGgagAGUuccccauGCCUGgCAGGg -3'
miRNA:   3'- gcCGGUUACCC---UCGu------CGGACgGUCCg -5'
3574 3' -60.5 NC_001650.1 + 7257 0.66 0.749312
Target:  5'- uGGCCGagggugcaGUGGGuAGCccccauugGGCC-GCCGGGa -3'
miRNA:   3'- gCCGGU--------UACCC-UCG--------UCGGaCGGUCCg -5'
3574 3' -60.5 NC_001650.1 + 80111 0.66 0.749312
Target:  5'- gCGGCCAGuUGGGAGUccaCUaCCAGGa -3'
miRNA:   3'- -GCCGGUU-ACCCUCGucgGAcGGUCCg -5'
3574 3' -60.5 NC_001650.1 + 172132 0.66 0.749312
Target:  5'- -aGCCAAUGGGgagAGUuccccauGCCUGgCAGGg -3'
miRNA:   3'- gcCGGUUACCC---UCGu------CGGACgGUCCg -5'
3574 3' -60.5 NC_001650.1 + 142635 0.66 0.749312
Target:  5'- aGGCCGGcggaGGGGGCuGCggCUGCUGcGGCc -3'
miRNA:   3'- gCCGGUUa---CCCUCGuCG--GACGGU-CCG- -5'
3574 3' -60.5 NC_001650.1 + 149762 0.66 0.749312
Target:  5'- gGGCC--UGGGGGauaAGCau-CCGGGCg -3'
miRNA:   3'- gCCGGuuACCCUCg--UCGgacGGUCCG- -5'
3574 3' -60.5 NC_001650.1 + 34454 0.66 0.749312
Target:  5'- gGGUgGAga-GGGCGGCCcaggaGCCGGGCg -3'
miRNA:   3'- gCCGgUUaccCUCGUCGGa----CGGUCCG- -5'
3574 3' -60.5 NC_001650.1 + 122503 0.66 0.749312
Target:  5'- aCGGUgAagaucAUGGaGAGCAGCCUGCacgagacccuGGUc -3'
miRNA:   3'- -GCCGgU-----UACC-CUCGUCGGACGgu--------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.