miRNA display CGI


Results 1 - 20 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3574 3' -60.5 NC_001650.1 + 46047 0.66 0.730439
Target:  5'- gCGGCCAAUGaGAagGGCCUGUaguuugagugaCGGGCc -3'
miRNA:   3'- -GCCGGUUACcCUcgUCGGACG-----------GUCCG- -5'
3574 3' -60.5 NC_001650.1 + 74745 0.66 0.758607
Target:  5'- gGGCCAcgGUGGcGGCcucCCUGCCAaacaccgggGGCa -3'
miRNA:   3'- gCCGGU--UACCcUCGuc-GGACGGU---------CCG- -5'
3574 3' -60.5 NC_001650.1 + 35816 0.66 0.72088
Target:  5'- cCGcGCCAG-GGGGGC-GCg-GCCAGGg -3'
miRNA:   3'- -GC-CGGUUaCCCUCGuCGgaCGGUCCg -5'
3574 3' -60.5 NC_001650.1 + 132204 0.66 0.72088
Target:  5'- uGGCC-GUGGG-GU-GCCUGCUgcgcGGCg -3'
miRNA:   3'- gCCGGuUACCCuCGuCGGACGGu---CCG- -5'
3574 3' -60.5 NC_001650.1 + 57755 0.66 0.73992
Target:  5'- gGGCgAcggGGGAGUAGCCcggcGCC-GGUa -3'
miRNA:   3'- gCCGgUua-CCCUCGUCGGa---CGGuCCG- -5'
3574 3' -60.5 NC_001650.1 + 133082 0.66 0.730439
Target:  5'- -aGCCGcgGccGGCGGCgaGCCAGGUg -3'
miRNA:   3'- gcCGGUuaCccUCGUCGgaCGGUCCG- -5'
3574 3' -60.5 NC_001650.1 + 91150 0.66 0.730439
Target:  5'- cCGGCCGcgGGG-GCuGCUgcggaUGCUgcggAGGCc -3'
miRNA:   3'- -GCCGGUuaCCCuCGuCGG-----ACGG----UCCG- -5'
3574 3' -60.5 NC_001650.1 + 111068 0.66 0.72088
Target:  5'- aGGCCcuaccccagGGGcuccAGCGGC--GCCAGGCg -3'
miRNA:   3'- gCCGGuua------CCC----UCGUCGgaCGGUCCG- -5'
3574 3' -60.5 NC_001650.1 + 139730 0.66 0.729487
Target:  5'- aGGCCAggGGGuccaggaAGCAGgaaGCUAGGCc -3'
miRNA:   3'- gCCGGUuaCCC-------UCGUCggaCGGUCCG- -5'
3574 3' -60.5 NC_001650.1 + 131971 0.66 0.730439
Target:  5'- gGGCCAGcUGuGGAGCAcgCUGCCcccgcuggacauGGGCc -3'
miRNA:   3'- gCCGGUU-AC-CCUCGUcgGACGG------------UCCG- -5'
3574 3' -60.5 NC_001650.1 + 181617 0.66 0.743688
Target:  5'- aCGGcCCAAcGGGGGUgcuguguaaccgcagAGCCc-CCGGGCg -3'
miRNA:   3'- -GCC-GGUUaCCCUCG---------------UCGGacGGUCCG- -5'
3574 3' -60.5 NC_001650.1 + 16078 0.66 0.73992
Target:  5'- uGGCCcaccuGUGGaGAGgGGCCUaacaacaugGCCucauGGCa -3'
miRNA:   3'- gCCGGu----UACC-CUCgUCGGA---------CGGu---CCG- -5'
3574 3' -60.5 NC_001650.1 + 157856 0.66 0.711248
Target:  5'- uGGCCAggGuGGAGguGCacaCCAGGg -3'
miRNA:   3'- gCCGGUuaC-CCUCguCGgacGGUCCg -5'
3574 3' -60.5 NC_001650.1 + 139788 0.66 0.729487
Target:  5'- aGGCCAggGGGuccaggaAGCAGgaaGCUAGGCc -3'
miRNA:   3'- gCCGGUuaCCC-------UCGUCggaCGGUCCG- -5'
3574 3' -60.5 NC_001650.1 + 138175 0.66 0.740863
Target:  5'- gCGGCCcugagcucguggagcAUGuGGGGCAGgCUGgUGGGCa -3'
miRNA:   3'- -GCCGGu--------------UAC-CCUCGUCgGACgGUCCG- -5'
3574 3' -60.5 NC_001650.1 + 66916 0.66 0.73992
Target:  5'- gGGCCg--GGGAGCAugggGCCGGGg -3'
miRNA:   3'- gCCGGuuaCCCUCGUcggaCGGUCCg -5'
3574 3' -60.5 NC_001650.1 + 100139 0.66 0.72088
Target:  5'- uGGCCAcUGuGGuGUAGCagGUCAGGUg -3'
miRNA:   3'- gCCGGUuAC-CCuCGUCGgaCGGUCCG- -5'
3574 3' -60.5 NC_001650.1 + 128283 0.66 0.748376
Target:  5'- gGGCCcAUGGaGAGcCAGCCggggGUCaaggacaGGGCc -3'
miRNA:   3'- gCCGGuUACC-CUC-GUCGGa---CGG-------UCCG- -5'
3574 3' -60.5 NC_001650.1 + 72726 0.66 0.72088
Target:  5'- gGGCCAAgcugGuGGGGCAGaCgCUGCU-GGUg -3'
miRNA:   3'- gCCGGUUa---C-CCUCGUC-G-GACGGuCCG- -5'
3574 3' -60.5 NC_001650.1 + 36677 0.66 0.729487
Target:  5'- uGGCCGGgcgGGaGGGCuacauCCUGCCaguggacAGGCa -3'
miRNA:   3'- gCCGGUUa--CC-CUCGuc---GGACGG-------UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.