miRNA display CGI


Results 41 - 60 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3575 5' -54.4 NC_001650.1 + 136856 0.69 0.874751
Target:  5'- cGCCUGGCAcuCugcccGCGGAGCcucagGGCg -3'
miRNA:   3'- aCGGACCGUcuGuaau-UGCCUCG-----CCG- -5'
3575 5' -54.4 NC_001650.1 + 136732 0.73 0.67475
Target:  5'- cGuCUUGGCGGugGgg-GCGGuGGCGGCg -3'
miRNA:   3'- aC-GGACCGUCugUaauUGCC-UCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 135942 0.7 0.80118
Target:  5'- aGCCUgagguggggGGCAGGCAcgGACaGAGgGGUg -3'
miRNA:   3'- aCGGA---------CCGUCUGUaaUUGcCUCgCCG- -5'
3575 5' -54.4 NC_001650.1 + 134485 0.69 0.881208
Target:  5'- gGCCUGGCGGGCGggGAaucguccuccuCGGAGUcccagaacucguaGGUu -3'
miRNA:   3'- aCGGACCGUCUGUaaUU-----------GCCUCG-------------CCG- -5'
3575 5' -54.4 NC_001650.1 + 133140 0.66 0.953697
Target:  5'- cGCCgcgGGgGGACccu--CGG-GCGGCu -3'
miRNA:   3'- aCGGa--CCgUCUGuaauuGCCuCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 132448 0.68 0.888854
Target:  5'- cGCCUGGCuGGgGgagagGAagaGGGGCGGg -3'
miRNA:   3'- aCGGACCGuCUgUaa---UUg--CCUCGCCg -5'
3575 5' -54.4 NC_001650.1 + 132047 0.72 0.695092
Target:  5'- gGCUUGGguGACGUcGGCGGc-CGGCc -3'
miRNA:   3'- aCGGACCguCUGUAaUUGCCucGCCG- -5'
3575 5' -54.4 NC_001650.1 + 131547 0.67 0.935911
Target:  5'- cGCCcgggGGCuGGAC----GCGGGGCGGa -3'
miRNA:   3'- aCGGa---CCG-UCUGuaauUGCCUCGCCg -5'
3575 5' -54.4 NC_001650.1 + 129268 0.66 0.957559
Target:  5'- aGCCUGGCGGGg--UcGCGc-GCGGCc -3'
miRNA:   3'- aCGGACCGUCUguaAuUGCcuCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 129135 0.66 0.957559
Target:  5'- cGCCcggGGCcgaGGACAcg---GGGGCGGCc -3'
miRNA:   3'- aCGGa--CCG---UCUGUaauugCCUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 128806 0.7 0.843965
Target:  5'- -aCCUGGgucaCGGGCuc-GGCGGGGCGGUg -3'
miRNA:   3'- acGGACC----GUCUGuaaUUGCCUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 128299 0.67 0.930869
Target:  5'- aGCCgggGGUcaaGGACAggGccuucGCGGAgGCGGUg -3'
miRNA:   3'- aCGGa--CCG---UCUGUaaU-----UGCCU-CGCCG- -5'
3575 5' -54.4 NC_001650.1 + 124308 0.67 0.944831
Target:  5'- gGCCgcGGCGGACGaggUGGCGcGAGUccuccccaacacgGGCg -3'
miRNA:   3'- aCGGa-CCGUCUGUa--AUUGC-CUCG-------------CCG- -5'
3575 5' -54.4 NC_001650.1 + 124090 0.72 0.715221
Target:  5'- gUGUCagaGGCcGACGggGGCGGAGCGuGCa -3'
miRNA:   3'- -ACGGa--CCGuCUGUaaUUGCCUCGC-CG- -5'
3575 5' -54.4 NC_001650.1 + 123999 0.67 0.930869
Target:  5'- cGCCgaGGUGGACAU---CGGGaaccacGCGGCg -3'
miRNA:   3'- aCGGa-CCGUCUGUAauuGCCU------CGCCG- -5'
3575 5' -54.4 NC_001650.1 + 122845 0.73 0.684943
Target:  5'- aGUCUGGCucuGACAgguccagcugGACGGGGUGGg -3'
miRNA:   3'- aCGGACCGu--CUGUaa--------UUGCCUCGCCg -5'
3575 5' -54.4 NC_001650.1 + 122622 0.69 0.874751
Target:  5'- gUGCCcggaGGCGGACAgguaguugUAGCGcGcGUGGCa -3'
miRNA:   3'- -ACGGa---CCGUCUGUa-------AUUGC-CuCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 122122 0.7 0.809196
Target:  5'- gGCCagGGCGGGgucggcuCGggGGCgGGGGCGGCg -3'
miRNA:   3'- aCGGa-CCGUCU-------GUaaUUG-CCUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 121784 0.72 0.744854
Target:  5'- cGCCcGGCGG-CGggggUAACggggaaggggGGAGCGGCg -3'
miRNA:   3'- aCGGaCCGUCuGUa---AUUG----------CCUCGCCG- -5'
3575 5' -54.4 NC_001650.1 + 121201 0.76 0.522158
Target:  5'- cGCCcGGCGGACggUGGaggccuuccUGGAGCGGUg -3'
miRNA:   3'- aCGGaCCGUCUGuaAUU---------GCCUCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.