Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
3576 | 5' | -48.5 | NC_001650.1 | + | 168935 | 0.67 | 0.998076 |
Target: 5'- cUGGcCUCCAUggccaAUGGGGAGagggugGGCCGGg -3' miRNA: 3'- uAUCaGAGGUA-----UAUCCCUUa-----UCGGUU- -5' |
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3576 | 5' | -48.5 | NC_001650.1 | + | 2228 | 0.67 | 0.998076 |
Target: 5'- cUGGcCUCCAUggccaAUGGGGAGagggugGGCCGGg -3' miRNA: 3'- uAUCaGAGGUA-----UAUCCCUUa-----UCGGUU- -5' |
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3576 | 5' | -48.5 | NC_001650.1 | + | 131403 | 0.68 | 0.994881 |
Target: 5'- cUGGUCUCCAgccaccgggccGGGGAAcuuggucgcuugccUAGCCAGg -3' miRNA: 3'- uAUCAGAGGUaua--------UCCCUU--------------AUCGGUU- -5' |
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3576 | 5' | -48.5 | NC_001650.1 | + | 141280 | 0.68 | 0.993743 |
Target: 5'- -gGGUCUCCGUGagucacgGGGGGAUuuCCAGg -3' miRNA: 3'- uaUCAGAGGUAUa------UCCCUUAucGGUU- -5' |
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3576 | 5' | -48.5 | NC_001650.1 | + | 145390 | 0.68 | 0.991604 |
Target: 5'- ---aUCUCCAU---GGGGAUGGCCGc -3' miRNA: 3'- uaucAGAGGUAuauCCCUUAUCGGUu -5' |
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3576 | 5' | -48.5 | NC_001650.1 | + | 183926 | 0.69 | 0.988924 |
Target: 5'- -gGGUCagCCAUAUuGGuGggUGGCCAu -3' miRNA: 3'- uaUCAGa-GGUAUAuCC-CuuAUCGGUu -5' |
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3576 | 5' | -48.5 | NC_001650.1 | + | 183773 | 0.69 | 0.988924 |
Target: 5'- -gGGUCagCCAUAUuGGuGggUGGCCAu -3' miRNA: 3'- uaUCAGa-GGUAUAuCC-CuuAUCGGUu -5' |
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3576 | 5' | -48.5 | NC_001650.1 | + | 183661 | 0.69 | 0.988924 |
Target: 5'- -gAGUCagCCAUGUuGGuGggUGGCCAu -3' miRNA: 3'- uaUCAGa-GGUAUAuCC-CuuAUCGGUu -5' |
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3576 | 5' | -48.5 | NC_001650.1 | + | 144907 | 0.69 | 0.988924 |
Target: 5'- -cAGUCUCUAUu--GGuGggUGGCCGGg -3' miRNA: 3'- uaUCAGAGGUAuauCC-CuuAUCGGUU- -5' |
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3576 | 5' | -48.5 | NC_001650.1 | + | 17219 | 0.69 | 0.988924 |
Target: 5'- -gGGUCagCCAUAUuGGuGggUGGCCAu -3' miRNA: 3'- uaUCAGa-GGUAUAuCC-CuuAUCGGUu -5' |
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3576 | 5' | -48.5 | NC_001650.1 | + | 17066 | 0.69 | 0.988924 |
Target: 5'- -gGGUCagCCAUAUuGGuGggUGGCCAu -3' miRNA: 3'- uaUCAGa-GGUAUAuCC-CuuAUCGGUu -5' |
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3576 | 5' | -48.5 | NC_001650.1 | + | 16954 | 0.69 | 0.988924 |
Target: 5'- -gAGUCagCCAUGUuGGuGggUGGCCAu -3' miRNA: 3'- uaUCAGa-GGUAUAuCC-CuuAUCGGUu -5' |
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3576 | 5' | -48.5 | NC_001650.1 | + | 93989 | 0.7 | 0.97411 |
Target: 5'- uGUAGUCUaCCAUAcgGGGGGAgauGUCAAg -3' miRNA: 3'- -UAUCAGA-GGUAUa-UCCCUUau-CGGUU- -5' |
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3576 | 5' | -48.5 | NC_001650.1 | + | 84203 | 0.73 | 0.903197 |
Target: 5'- -cGGUCUgcggguuccCCGUGUGGGGAGUGGCa-- -3' miRNA: 3'- uaUCAGA---------GGUAUAUCCCUUAUCGguu -5' |
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3576 | 5' | -48.5 | NC_001650.1 | + | 171025 | 1.04 | 0.025423 |
Target: 5'- cAUAGUCUCCAUAUAGGGAAUAGCCAAu -3' miRNA: 3'- -UAUCAGAGGUAUAUCCCUUAUCGGUU- -5' |
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3576 | 5' | -48.5 | NC_001650.1 | + | 4318 | 1.04 | 0.025423 |
Target: 5'- cAUAGUCUCCAUAUAGGGAAUAGCCAAu -3' miRNA: 3'- -UAUCAGAGGUAUAUCCCUUAUCGGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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