miRNA display CGI


Results 1 - 16 of 16 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3576 5' -48.5 NC_001650.1 + 2228 0.67 0.998076
Target:  5'- cUGGcCUCCAUggccaAUGGGGAGagggugGGCCGGg -3'
miRNA:   3'- uAUCaGAGGUA-----UAUCCCUUa-----UCGGUU- -5'
3576 5' -48.5 NC_001650.1 + 168935 0.67 0.998076
Target:  5'- cUGGcCUCCAUggccaAUGGGGAGagggugGGCCGGg -3'
miRNA:   3'- uAUCaGAGGUA-----UAUCCCUUa-----UCGGUU- -5'
3576 5' -48.5 NC_001650.1 + 131403 0.68 0.994881
Target:  5'- cUGGUCUCCAgccaccgggccGGGGAAcuuggucgcuugccUAGCCAGg -3'
miRNA:   3'- uAUCAGAGGUaua--------UCCCUU--------------AUCGGUU- -5'
3576 5' -48.5 NC_001650.1 + 141280 0.68 0.993743
Target:  5'- -gGGUCUCCGUGagucacgGGGGGAUuuCCAGg -3'
miRNA:   3'- uaUCAGAGGUAUa------UCCCUUAucGGUU- -5'
3576 5' -48.5 NC_001650.1 + 145390 0.68 0.991604
Target:  5'- ---aUCUCCAU---GGGGAUGGCCGc -3'
miRNA:   3'- uaucAGAGGUAuauCCCUUAUCGGUu -5'
3576 5' -48.5 NC_001650.1 + 183926 0.69 0.988924
Target:  5'- -gGGUCagCCAUAUuGGuGggUGGCCAu -3'
miRNA:   3'- uaUCAGa-GGUAUAuCC-CuuAUCGGUu -5'
3576 5' -48.5 NC_001650.1 + 16954 0.69 0.988924
Target:  5'- -gAGUCagCCAUGUuGGuGggUGGCCAu -3'
miRNA:   3'- uaUCAGa-GGUAUAuCC-CuuAUCGGUu -5'
3576 5' -48.5 NC_001650.1 + 17066 0.69 0.988924
Target:  5'- -gGGUCagCCAUAUuGGuGggUGGCCAu -3'
miRNA:   3'- uaUCAGa-GGUAUAuCC-CuuAUCGGUu -5'
3576 5' -48.5 NC_001650.1 + 17219 0.69 0.988924
Target:  5'- -gGGUCagCCAUAUuGGuGggUGGCCAu -3'
miRNA:   3'- uaUCAGa-GGUAUAuCC-CuuAUCGGUu -5'
3576 5' -48.5 NC_001650.1 + 183661 0.69 0.988924
Target:  5'- -gAGUCagCCAUGUuGGuGggUGGCCAu -3'
miRNA:   3'- uaUCAGa-GGUAUAuCC-CuuAUCGGUu -5'
3576 5' -48.5 NC_001650.1 + 183773 0.69 0.988924
Target:  5'- -gGGUCagCCAUAUuGGuGggUGGCCAu -3'
miRNA:   3'- uaUCAGa-GGUAUAuCC-CuuAUCGGUu -5'
3576 5' -48.5 NC_001650.1 + 144907 0.69 0.988924
Target:  5'- -cAGUCUCUAUu--GGuGggUGGCCGGg -3'
miRNA:   3'- uaUCAGAGGUAuauCC-CuuAUCGGUU- -5'
3576 5' -48.5 NC_001650.1 + 93989 0.7 0.97411
Target:  5'- uGUAGUCUaCCAUAcgGGGGGAgauGUCAAg -3'
miRNA:   3'- -UAUCAGA-GGUAUa-UCCCUUau-CGGUU- -5'
3576 5' -48.5 NC_001650.1 + 84203 0.73 0.903197
Target:  5'- -cGGUCUgcggguuccCCGUGUGGGGAGUGGCa-- -3'
miRNA:   3'- uaUCAGA---------GGUAUAUCCCUUAUCGguu -5'
3576 5' -48.5 NC_001650.1 + 4318 1.04 0.025423
Target:  5'- cAUAGUCUCCAUAUAGGGAAUAGCCAAu -3'
miRNA:   3'- -UAUCAGAGGUAUAUCCCUUAUCGGUU- -5'
3576 5' -48.5 NC_001650.1 + 171025 1.04 0.025423
Target:  5'- cAUAGUCUCCAUAUAGGGAAUAGCCAAu -3'
miRNA:   3'- -UAUCAGAGGUAUAUCCCUUAUCGGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.