miRNA: 3'- -CGACCCACCU--CCCAUgGaGCGCCaGU- -5'
miRNA: 3'- -CGACCCaCCUCCCA--UGg-AGCGCCAgu -5'
miRNA: 3'- -CGACCCACCUCCCAUGGAGCGCCAGU- -5'
miRNA: 3'- -CGACCCACCUCCCAUGGAGCGCCAGU- -5'
Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 3577 | 3' | -59.3 | NC_001650.1 | + | 178345 | 0.7 | 0.580685 |
|
Target: 5'- aGUUGGGUGGGcuGGGUGgCgCGCGG-CGa -3' miRNA: 3'- -CGACCCACCU--CCCAUgGaGCGCCaGU- -5' |
|||||||
| 3577 | 3' | -59.3 | NC_001650.1 | + | 46914 | 0.75 | 0.336789 |
|
Target: 5'- gGCUGGGgGGGGGGUucGCgaUCGCGGUg- -3' miRNA: 3'- -CGACCCaCCUCCCA--UGg-AGCGCCAgu -5' |
|||||||
| 3577 | 3' | -59.3 | NC_001650.1 | + | 4464 | 1.09 | 0.001741 |
|
Target: 5'- gGCUGGGUGGAGGGUACCUCGCGGUCAu -3' miRNA: 3'- -CGACCCACCUCCCAUGGAGCGCCAGU- -5' |
|||||||
| 3577 | 3' | -59.3 | NC_001650.1 | + | 171171 | 1.09 | 0.001741 |
|
Target: 5'- gGCUGGGUGGAGGGUACCUCGCGGUCAu -3' miRNA: 3'- -CGACCCACCUCCCAUGGAGCGCCAGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home