Results 41 - 48 of 48 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 3578 | 3' | -51.8 | NC_001650.1 | + | 169803 | 0.66 | 0.987427 |
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Target: 5'- uAGGGUGGg-CUAGGGGGUg------- -3' miRNA: 3'- -UCCCACCagGAUCUCCCAgaaauucu -5' |
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| 3578 | 3' | -51.8 | NC_001650.1 | + | 179033 | 0.66 | 0.987427 |
|
Target: 5'- uGGGUGuGUgCCaGGGGGGUUUggggUGGGGc -3' miRNA: 3'- uCCCAC-CA-GGaUCUCCCAGAa---AUUCU- -5' |
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| 3578 | 3' | -51.8 | NC_001650.1 | + | 29393 | 0.66 | 0.993553 |
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Target: 5'- cGGcGGUGG-CCUucgagauagAGGGGGUCaggAGGAg -3' miRNA: 3'- -UC-CCACCaGGA---------UCUCCCAGaaaUUCU- -5' |
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| 3578 | 3' | -51.8 | NC_001650.1 | + | 157220 | 0.66 | 0.987427 |
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Target: 5'- cGGGUGGUCUUcuucacGGGGGaCUcgAAGGg -3' miRNA: 3'- uCCCACCAGGAu-----CUCCCaGAaaUUCU- -5' |
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| 3578 | 3' | -51.8 | NC_001650.1 | + | 49577 | 0.66 | 0.987427 |
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Target: 5'- cGGGGUGGUCuCUGugauGGGGG-Cg--GAGGu -3' miRNA: 3'- -UCCCACCAG-GAU----CUCCCaGaaaUUCU- -5' |
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| 3578 | 3' | -51.8 | NC_001650.1 | + | 130071 | 0.66 | 0.991481 |
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Target: 5'- gGGGGUGGagagggCCggGGAGGGgg---GAGAg -3' miRNA: 3'- -UCCCACCa-----GGa-UCUCCCagaaaUUCU- -5' |
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| 3578 | 3' | -51.8 | NC_001650.1 | + | 152066 | 0.66 | 0.993553 |
|
Target: 5'- uGGaucUGGUCCUGGuuuGGGGUCUuccUUGGGu -3' miRNA: 3'- uCCc--ACCAGGAUC---UCCCAGA---AAUUCu -5' |
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| 3578 | 3' | -51.8 | NC_001650.1 | + | 70768 | 0.66 | 0.993553 |
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Target: 5'- uGGuGG-GGUCgUuGAGGGUCUUguAGAu -3' miRNA: 3'- -UC-CCaCCAGgAuCUCCCAGAAauUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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