Results 41 - 48 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3578 | 3' | -51.8 | NC_001650.1 | + | 12521 | 0.7 | 0.918561 |
Target: 5'- uGGGUGGUCCcuucucucuuguacaUGG-GGGUCccUGGGAg -3' miRNA: 3'- uCCCACCAGG---------------AUCuCCCAGaaAUUCU- -5' |
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3578 | 3' | -51.8 | NC_001650.1 | + | 12326 | 0.66 | 0.987427 |
Target: 5'- uGGGUGuGUgCCaGGGGGGUUUggggUGGGGc -3' miRNA: 3'- uCCCAC-CA-GGaUCUCCCAGAa---AUUCU- -5' |
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3578 | 3' | -51.8 | NC_001650.1 | + | 8825 | 0.67 | 0.98399 |
Target: 5'- uGGG-GGUCUgguggguguGGGGGUCcUUGGGAu -3' miRNA: 3'- uCCCaCCAGGau-------CUCCCAGaAAUUCU- -5' |
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3578 | 3' | -51.8 | NC_001650.1 | + | 8658 | 0.7 | 0.91622 |
Target: 5'- uGGGUGGUCCaUGGuguuGGGUgaUUGGGu -3' miRNA: 3'- uCCCACCAGG-AUCu---CCCAgaAAUUCu -5' |
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3578 | 3' | -51.8 | NC_001650.1 | + | 4899 | 1.09 | 0.008185 |
Target: 5'- cAGGGUGGUCCUAGAGGGUCUUUAAGAc -3' miRNA: 3'- -UCCCACCAGGAUCUCCCAGAAAUUCU- -5' |
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3578 | 3' | -51.8 | NC_001650.1 | + | 4675 | 0.77 | 0.600484 |
Target: 5'- uGGG-GGUCC-GGGGGGUCUUaAAGAc -3' miRNA: 3'- uCCCaCCAGGaUCUCCCAGAAaUUCU- -5' |
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3578 | 3' | -51.8 | NC_001650.1 | + | 4216 | 0.72 | 0.861313 |
Target: 5'- uGGGG-GGUCaUGGGGGGUCUU--AGGu -3' miRNA: 3'- -UCCCaCCAGgAUCUCCCAGAAauUCU- -5' |
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3578 | 3' | -51.8 | NC_001650.1 | + | 3096 | 0.66 | 0.987427 |
Target: 5'- uAGGGUGGg-CUAGGGGGUg------- -3' miRNA: 3'- -UCCCACCagGAUCUCCCAgaaauucu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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