Results 41 - 49 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3579 | 3' | -42.7 | NC_001650.1 | + | 25818 | 0.71 | 0.999934 |
Target: 5'- gAGCUGGUgauGCAGguuccagucagcguCGAGGCCCCc -3' miRNA: 3'- -UUGACUAau-UGUUaauu----------GCUUCGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 110904 | 0.71 | 0.999928 |
Target: 5'- cGACUGG--AugGGggGGCGAgcaGGCCCCg -3' miRNA: 3'- -UUGACUaaUugUUaaUUGCU---UCGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 38372 | 0.71 | 0.999928 |
Target: 5'- gGugUGAUaguuuUGGCAAcUGAgUGAGGCCCCu -3' miRNA: 3'- -UugACUA-----AUUGUUaAUU-GCUUCGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 111490 | 0.72 | 0.999774 |
Target: 5'- cACUGuuggGGCGGgcacugcugcgGGCGAGGCCCCa -3' miRNA: 3'- uUGACuaa-UUGUUaa---------UUGCUUCGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 147150 | 0.73 | 0.999647 |
Target: 5'- cACUGAUUGACAGcgGcCGggGCCa- -3' miRNA: 3'- uUGACUAAUUGUUaaUuGCuuCGGgg -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 183850 | 0.74 | 0.998911 |
Target: 5'- uGACUGuUUGugGGUUAugGggGCuuCCCa -3' miRNA: 3'- -UUGACuAAUugUUAAUugCuuCG--GGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 17143 | 0.74 | 0.998911 |
Target: 5'- uGACUGuUUGugGGUUAugGggGCuuCCCa -3' miRNA: 3'- -UUGACuAAUugUUAAUugCuuCG--GGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 5278 | 1.11 | 0.053339 |
Target: 5'- uAACUGAUUAACAAUUAACGAAGCCCCc -3' miRNA: 3'- -UUGACUAAUUGUUAAUUGCUUCGGGG- -5' |
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3579 | 3' | -42.7 | NC_001650.1 | + | 171985 | 1.11 | 0.053339 |
Target: 5'- uAACUGAUUAACAAUUAACGAAGCCCCc -3' miRNA: 3'- -UUGACUAAUUGUUAAUUGCUUCGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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