miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
358 5' -59.3 AC_000011.1 + 10166 0.66 0.412571
Target:  5'- gCGGCcaucgCUCGG-UGGCGGgGGCgCCGg -3'
miRNA:   3'- gGUCGaa---GAGCCuGUCGCCgUCG-GGC- -5'
358 5' -59.3 AC_000011.1 + 8459 0.66 0.39412
Target:  5'- gCGGCgaggacgCgcgcCGGGCGGCaggGGCGGCUCGg -3'
miRNA:   3'- gGUCGaa-----Ga---GCCUGUCG---CCGUCGGGC- -5'
358 5' -59.3 AC_000011.1 + 17855 0.66 0.385096
Target:  5'- gCGGCaUCUccaCGGAgcCGGCgGGCGGCaCCGg -3'
miRNA:   3'- gGUCGaAGA---GCCU--GUCG-CCGUCG-GGC- -5'
358 5' -59.3 AC_000011.1 + 21902 0.66 0.37621
Target:  5'- aUCAGCagUUUGGGCAGCGgGguGUCgGg -3'
miRNA:   3'- -GGUCGaaGAGCCUGUCGC-CguCGGgC- -5'
358 5' -59.3 AC_000011.1 + 26731 0.66 0.37621
Target:  5'- uCCAGCUgg-CGGGCGGCGcCA-CCCu -3'
miRNA:   3'- -GGUCGAagaGCCUGUCGCcGUcGGGc -5'
358 5' -59.3 AC_000011.1 + 13694 0.67 0.333898
Target:  5'- aCCGGCgUUUaCGGGCGGCG-CuGCCCc -3'
miRNA:   3'- -GGUCGaAGA-GCCUGUCGCcGuCGGGc -5'
358 5' -59.3 AC_000011.1 + 11895 0.67 0.325864
Target:  5'- cCCAGCcgccgggcCUUGGagGCGGCGGCAGgaCCCu -3'
miRNA:   3'- -GGUCGaa------GAGCC--UGUCGCCGUC--GGGc -5'
358 5' -59.3 AC_000011.1 + 2941 0.67 0.317195
Target:  5'- gCAGCccgUCUCGGuagaggcGCAGUGGCGgauucuggcuucGCCCu -3'
miRNA:   3'- gGUCGa--AGAGCC-------UGUCGCCGU------------CGGGc -5'
358 5' -59.3 AC_000011.1 + 1085 0.69 0.266786
Target:  5'- aCAGCcgugUC-CGGGCAGaggcgGGCAGUCCa -3'
miRNA:   3'- gGUCGa---AGaGCCUGUCg----CCGUCGGGc -5'
358 5' -59.3 AC_000011.1 + 17979 0.69 0.260042
Target:  5'- cCCAGUUUCaccgccuccUCGuACGGgGGCGGCUCGu -3'
miRNA:   3'- -GGUCGAAG---------AGCcUGUCgCCGUCGGGC- -5'
358 5' -59.3 AC_000011.1 + 18304 0.69 0.246973
Target:  5'- uCCucCUUCUggUGGACAGCGGCGGCg-- -3'
miRNA:   3'- -GGucGAAGA--GCCUGUCGCCGUCGggc -5'
358 5' -59.3 AC_000011.1 + 8245 0.69 0.240644
Target:  5'- gUCAGg-UCagUGGGCAGCGGCGGCgCGc -3'
miRNA:   3'- -GGUCgaAGa-GCCUGUCGCCGUCGgGC- -5'
358 5' -59.3 AC_000011.1 + 17262 0.71 0.189616
Target:  5'- gCCAGcCUUCUaCGGcGCGGUuuucuuccucGGUAGCCCGu -3'
miRNA:   3'- -GGUC-GAAGA-GCC-UGUCG----------CCGUCGGGC- -5'
358 5' -59.3 AC_000011.1 + 12733 0.72 0.156745
Target:  5'- gCCccCUUCaCGGACAGCGGCAGCaucaaCCGc -3'
miRNA:   3'- -GGucGAAGaGCCUGUCGCCGUCG-----GGC- -5'
358 5' -59.3 AC_000011.1 + 13430 0.72 0.152493
Target:  5'- aCUGGCggcCUCGGGCAccgccGCGGCAGCaCCc -3'
miRNA:   3'- -GGUCGaa-GAGCCUGU-----CGCCGUCG-GGc -5'
358 5' -59.3 AC_000011.1 + 9360 0.73 0.144301
Target:  5'- gCCGGCgucgcauggUCUCGGugA-CGGCGcGCCCGu -3'
miRNA:   3'- -GGUCGa--------AGAGCCugUcGCCGU-CGGGC- -5'
358 5' -59.3 AC_000011.1 + 33883 0.74 0.112209
Target:  5'- gCAGCUUgaCGGAgCGGCGGCGGCagCGa -3'
miRNA:   3'- gGUCGAAgaGCCU-GUCGCCGUCGg-GC- -5'
358 5' -59.3 AC_000011.1 + 11622 1.09 0.000235
Target:  5'- gCCAGCUUCUCGGACAGCGGCAGCCCGc -3'
miRNA:   3'- -GGUCGAAGAGCCUGUCGCCGUCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.