miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3580 5' -59 NC_001650.1 + 40817 0.66 0.80181
Target:  5'- uUUUGAGGauguaGCCGCCC-CUCUcuaGCCCu -3'
miRNA:   3'- cAGAUUCCcc---CGGCGGGuGAGA---UGGG- -5'
3580 5' -59 NC_001650.1 + 106362 0.66 0.80181
Target:  5'- gGUC--AGGGGGCUguggGUCCACUUgACCa -3'
miRNA:   3'- -CAGauUCCCCCGG----CGGGUGAGaUGGg -5'
3580 5' -59 NC_001650.1 + 158257 0.66 0.80181
Target:  5'- gGUUUcc-GGGGCCGCCUgcggcguguACUCUgugACCCc -3'
miRNA:   3'- -CAGAuucCCCCGGCGGG---------UGAGA---UGGG- -5'
3580 5' -59 NC_001650.1 + 57982 0.67 0.79309
Target:  5'- cGUCgau--GGGCUGUCCGaacCUCUGCCCc -3'
miRNA:   3'- -CAGauuccCCCGGCGGGU---GAGAUGGG- -5'
3580 5' -59 NC_001650.1 + 157752 0.67 0.79309
Target:  5'- --aUAGGGGGGCgCGUCCgGCcCU-CCCa -3'
miRNA:   3'- cagAUUCCCCCG-GCGGG-UGaGAuGGG- -5'
3580 5' -59 NC_001650.1 + 121615 0.67 0.79309
Target:  5'- -----cGGGuGGcCCGUCCACUcCUACCUc -3'
miRNA:   3'- cagauuCCC-CC-GGCGGGUGA-GAUGGG- -5'
3580 5' -59 NC_001650.1 + 56383 0.67 0.784234
Target:  5'- ----cGGGcgaaccGGGCCGCCCucGCUCUuCCCc -3'
miRNA:   3'- cagauUCC------CCCGGCGGG--UGAGAuGGG- -5'
3580 5' -59 NC_001650.1 + 8145 0.67 0.783342
Target:  5'- -----cGGGGGCCcaaugggggauGUCCACuagccccUCUGCCCa -3'
miRNA:   3'- cagauuCCCCCGG-----------CGGGUG-------AGAUGGG- -5'
3580 5' -59 NC_001650.1 + 174852 0.67 0.783342
Target:  5'- -----cGGGGGCCcaaugggggauGUCCACuagccccUCUGCCCa -3'
miRNA:   3'- cagauuCCCCCGG-----------CGGGUG-------AGAUGGG- -5'
3580 5' -59 NC_001650.1 + 59945 0.67 0.77525
Target:  5'- -----cGGGGGCCacggGCCC-CUCgacGCCCc -3'
miRNA:   3'- cagauuCCCCCGG----CGGGuGAGa--UGGG- -5'
3580 5' -59 NC_001650.1 + 174175 0.67 0.77525
Target:  5'- -----uGGGGGCUaCCCACUgcACCCu -3'
miRNA:   3'- cagauuCCCCCGGcGGGUGAgaUGGG- -5'
3580 5' -59 NC_001650.1 + 7468 0.67 0.77525
Target:  5'- -----uGGGGGCUaCCCACUgcACCCu -3'
miRNA:   3'- cagauuCCCCCGGcGGGUGAgaUGGG- -5'
3580 5' -59 NC_001650.1 + 88190 0.67 0.77525
Target:  5'- ---gGAGGGGGcCCGCCCA----ACCUa -3'
miRNA:   3'- cagaUUCCCCC-GGCGGGUgagaUGGG- -5'
3580 5' -59 NC_001650.1 + 15419 0.67 0.77525
Target:  5'- ---gAAGGGGGgaGCCCGCUgcgGCCUc -3'
miRNA:   3'- cagaUUCCCCCggCGGGUGAga-UGGG- -5'
3580 5' -59 NC_001650.1 + 182126 0.67 0.77525
Target:  5'- ---gAAGGGGGgaGCCCGCUgcgGCCUc -3'
miRNA:   3'- cagaUUCCCCCggCGGGUGAga-UGGG- -5'
3580 5' -59 NC_001650.1 + 25355 0.67 0.77525
Target:  5'- cGUCUcaucugauccGAGGGGGUuaagagccgCGaCCCGCUCccguCCCg -3'
miRNA:   3'- -CAGA----------UUCCCCCG---------GC-GGGUGAGau--GGG- -5'
3580 5' -59 NC_001650.1 + 170684 0.67 0.77525
Target:  5'- -aCUAGGGGuGG-CGCCCggggcggaGCUC-GCCCa -3'
miRNA:   3'- caGAUUCCC-CCgGCGGG--------UGAGaUGGG- -5'
3580 5' -59 NC_001650.1 + 129229 0.67 0.774345
Target:  5'- gGUC-GAGGGGaaGCuguccgaCGCCCACUCccuggugGCCCg -3'
miRNA:   3'- -CAGaUUCCCC--CG-------GCGGGUGAGa------UGGG- -5'
3580 5' -59 NC_001650.1 + 132087 0.67 0.766146
Target:  5'- aGUCagGAGGGGaGCCGgggaCCC-C-CUACCCc -3'
miRNA:   3'- -CAGa-UUCCCC-CGGC----GGGuGaGAUGGG- -5'
3580 5' -59 NC_001650.1 + 133153 0.67 0.756929
Target:  5'- ---cGAGGGGGaaguaCCGCCCACgCUccGCCg -3'
miRNA:   3'- cagaUUCCCCC-----GGCGGGUGaGA--UGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.