miRNA display CGI


Results 61 - 80 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3581 3' -56.8 NC_001650.1 + 7468 0.67 0.841619
Target:  5'- --uGGGGGCuacccACUGCaCC-CUCGgccaauaaagACCCCg -3'
miRNA:   3'- gauUCCCCG-----UGACG-GGuGAGU----------UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 133929 0.67 0.857246
Target:  5'- --uGGGGGCGCccCCCA---GACCCCg -3'
miRNA:   3'- gauUCCCCGUGacGGGUgagUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 82273 0.67 0.856483
Target:  5'- -gAGGGGGUcccggaggagggaGCccCCCGCUC-GCCCCa -3'
miRNA:   3'- gaUUCCCCG-------------UGacGGGUGAGuUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 31259 0.67 0.856483
Target:  5'- -aAGGGGGCggaggccAUUGCCgACgcggAGCCCCu -3'
miRNA:   3'- gaUUCCCCG-------UGACGGgUGag--UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 138135 0.67 0.87919
Target:  5'- gUGAGGcugaGGCGCUGCCacagAUUCcuGCCCUg -3'
miRNA:   3'- gAUUCC----CCGUGACGGg---UGAGu-UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 117673 0.67 0.857246
Target:  5'- gUGGGGGGCGCUccGCCgCACgcCAACUg- -3'
miRNA:   3'- gAUUCCCCGUGA--CGG-GUGa-GUUGGgg -5'
3581 3' -56.8 NC_001650.1 + 31480 0.67 0.844805
Target:  5'- uUGAGGGGCuccgcgucggcaaugGCcuccGCCCcCUUcGCCCCa -3'
miRNA:   3'- gAUUCCCCG---------------UGa---CGGGuGAGuUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 111116 0.67 0.857246
Target:  5'- ---cGGGGC-CUGCUCGCcc--CCCCa -3'
miRNA:   3'- gauuCCCCGuGACGGGUGaguuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 2995 0.67 0.857246
Target:  5'- uUAGGGGGCGuCgcacaGCCCuuuaugggcACUCccccauGACCCCu -3'
miRNA:   3'- gAUUCCCCGU-Ga----CGGG---------UGAG------UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 165752 0.67 0.864766
Target:  5'- -cAAGuGcuGCAgCUGCCCGCUCAacaGCCCUc -3'
miRNA:   3'- gaUUC-Cc-CGU-GACGGGUGAGU---UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 21965 0.67 0.872082
Target:  5'- -cAGGGGGCGCcGCagCugUUgcuGCCCCc -3'
miRNA:   3'- gaUUCCCCGUGaCGg-GugAGu--UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 88195 0.67 0.864766
Target:  5'- -aAGGGGGaggggGCCCGCcCAACCUa -3'
miRNA:   3'- gaUUCCCCguga-CGGGUGaGUUGGGg -5'
3581 3' -56.8 NC_001650.1 + 169702 0.67 0.857246
Target:  5'- uUAGGGGGCGuCgcacaGCCCuuuaugggcACUCccccauGACCCCu -3'
miRNA:   3'- gAUUCCCCGU-Ga----CGGG---------UGAG------UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 181856 0.67 0.858007
Target:  5'- --uAGGGGCGCUuuccGCCCggggGCUCugcgguuacaucagcACCCCc -3'
miRNA:   3'- gauUCCCCGUGA----CGGG----UGAGu--------------UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 15149 0.67 0.858007
Target:  5'- --uAGGGGCGCUuuccGCCCggggGCUCugcgguuacaucagcACCCCc -3'
miRNA:   3'- gauUCCCCGUGA----CGGG----UGAGu--------------UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 122445 0.67 0.849529
Target:  5'- ---uGGGGCACcucGCCC-C-CGGCCUCg -3'
miRNA:   3'- gauuCCCCGUGa--CGGGuGaGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 63202 0.67 0.872082
Target:  5'- aUGAGGGuCGucUUGCCCACccccaUgGACCCCu -3'
miRNA:   3'- gAUUCCCcGU--GACGGGUG-----AgUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 31135 0.67 0.872082
Target:  5'- ----cGGGCGgUG-CCAC-CGACCCCg -3'
miRNA:   3'- gauucCCCGUgACgGGUGaGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 165559 0.67 0.87919
Target:  5'- --uAGGGGCucGCcGCCUucuUUCAACCCg -3'
miRNA:   3'- gauUCCCCG--UGaCGGGu--GAGUUGGGg -5'
3581 3' -56.8 NC_001650.1 + 129353 0.67 0.87919
Target:  5'- -gAAGaGGGC-C-GCCCccgugucCUCGGCCCCg -3'
miRNA:   3'- gaUUC-CCCGuGaCGGGu------GAGUUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.