miRNA display CGI


Results 81 - 100 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3581 3' -56.8 NC_001650.1 + 138421 0.67 0.841619
Target:  5'- ---uGGGGacgacugcccuaCAUUGCCCAC-CAgccuGCCCCa -3'
miRNA:   3'- gauuCCCC------------GUGACGGGUGaGU----UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 131691 0.67 0.841619
Target:  5'- -gAAGGGGUugU-CCCGCgcgGACCCg -3'
miRNA:   3'- gaUUCCCCGugAcGGGUGag-UUGGGg -5'
3581 3' -56.8 NC_001650.1 + 7468 0.67 0.841619
Target:  5'- --uGGGGGCuacccACUGCaCC-CUCGgccaauaaagACCCCg -3'
miRNA:   3'- gauUCCCCG-----UGACG-GGuGAGU----------UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 31135 0.67 0.872082
Target:  5'- ----cGGGCGgUG-CCAC-CGACCCCg -3'
miRNA:   3'- gauucCCCGUgACgGGUGaGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 30470 0.67 0.849529
Target:  5'- -cAGGGGGguCUcGCCCAUcCcGCCCg -3'
miRNA:   3'- gaUUCCCCguGA-CGGGUGaGuUGGGg -5'
3581 3' -56.8 NC_001650.1 + 138135 0.67 0.87919
Target:  5'- gUGAGGcugaGGCGCUGCCacagAUUCcuGCCCUg -3'
miRNA:   3'- gAUUCC----CCGUGACGGg---UGAGu-UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 129353 0.67 0.87919
Target:  5'- -gAAGaGGGC-C-GCCCccgugucCUCGGCCCCg -3'
miRNA:   3'- gaUUC-CCCGuGaCGGGu------GAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 21965 0.67 0.872082
Target:  5'- -cAGGGGGCGCcGCagCugUUgcuGCCCCc -3'
miRNA:   3'- gaUUCCCCGUGaCGg-GugAGu--UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 105616 0.67 0.872082
Target:  5'- -aGAGGGGUACU-UCUACUUAucuGCCUCu -3'
miRNA:   3'- gaUUCCCCGUGAcGGGUGAGU---UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 63202 0.67 0.872082
Target:  5'- aUGAGGGuCGucUUGCCCACccccaUgGACCCCu -3'
miRNA:   3'- gAUUCCCcGU--GACGGGUG-----AgUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 4068 0.68 0.834343
Target:  5'- gUAGGGGGCuucCUaGCCCcCUaccagcauugcaacaGACCCCg -3'
miRNA:   3'- gAUUCCCCGu--GA-CGGGuGAg--------------UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 141944 0.68 0.825253
Target:  5'- -aGGGGGGCAaacCCC-CUCGGCCgCg -3'
miRNA:   3'- gaUUCCCCGUgacGGGuGAGUUGGgG- -5'
3581 3' -56.8 NC_001650.1 + 70500 0.68 0.824417
Target:  5'- -gAGGGGGCugguggacaccguGCUGCacgugaaGCUCAggagcGCCCCg -3'
miRNA:   3'- gaUUCCCCG-------------UGACGgg-----UGAGU-----UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 56287 0.68 0.825253
Target:  5'- -gGGGGGGUGgUGCCUggcGCgc-GCCCCa -3'
miRNA:   3'- gaUUCCCCGUgACGGG---UGaguUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 30234 0.68 0.799444
Target:  5'- -gGAGGGGuCGCaguaGCCCAggaggcugacCUCGGCCgCCa -3'
miRNA:   3'- gaUUCCCC-GUGa---CGGGU----------GAGUUGG-GG- -5'
3581 3' -56.8 NC_001650.1 + 125788 0.68 0.816811
Target:  5'- -gAAGGGGCGCgGCgUCGaaggcggaUCAAUCCCa -3'
miRNA:   3'- gaUUCCCCGUGaCG-GGUg-------AGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 45210 0.68 0.816811
Target:  5'- ---cGGGGCGCgGUUCcacggGCUCAcCCCCa -3'
miRNA:   3'- gauuCCCCGUGaCGGG-----UGAGUuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 42467 0.68 0.815957
Target:  5'- ---cGGGGCuauGCUaCCCugUCAuccaggaACCCCa -3'
miRNA:   3'- gauuCCCCG---UGAcGGGugAGU-------UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 156867 0.68 0.808205
Target:  5'- uCUcGGGGGCAUcgGCCaGCUCGagaGCCUCc -3'
miRNA:   3'- -GAuUCCCCGUGa-CGGgUGAGU---UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 51006 0.68 0.808205
Target:  5'- --cGGGGGCGCggGCgCGg-CGGCCCCc -3'
miRNA:   3'- gauUCCCCGUGa-CGgGUgaGUUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.