Results 101 - 120 of 228 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
3581 | 3' | -56.8 | NC_001650.1 | + | 46363 | 0.68 | 0.808205 |
Target: 5'- ---cGGGGCGCgGCgCCGCaUCGGCCg- -3' miRNA: 3'- gauuCCCCGUGaCG-GGUG-AGUUGGgg -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 159984 | 0.68 | 0.807336 |
Target: 5'- uCUcuGGGGcCACcuaguggccucuuUGCUC-CUCAACCCCc -3' miRNA: 3'- -GAuuCCCC-GUG-------------ACGGGuGAGUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 174635 | 0.68 | 0.799444 |
Target: 5'- -aGAGGGGCuaguggACUccCCCAUUgGGCCCCc -3' miRNA: 3'- gaUUCCCCG------UGAc-GGGUGAgUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 171909 | 0.68 | 0.799444 |
Target: 5'- --uAGGGGCcCUGCCaggcauggggaACUCu-CCCCa -3' miRNA: 3'- gauUCCCCGuGACGGg----------UGAGuuGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 167305 | 0.68 | 0.799444 |
Target: 5'- -gAGGGGGCgaggccggGCUGCCgCcCUCccccgGGCCCCc -3' miRNA: 3'- gaUUCCCCG--------UGACGG-GuGAG-----UUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 111270 | 0.68 | 0.799444 |
Target: 5'- ---uGGGGC-CUcGCCCGCagCAgugcccGCCCCa -3' miRNA: 3'- gauuCCCCGuGA-CGGGUGa-GU------UGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 5202 | 0.68 | 0.799444 |
Target: 5'- --uAGGGGCcCUGCCaggcauggggaACUCu-CCCCa -3' miRNA: 3'- gauUCCCCGuGACGGg----------UGAGuuGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 45210 | 0.68 | 0.816811 |
Target: 5'- ---cGGGGCGCgGUUCcacggGCUCAcCCCCa -3' miRNA: 3'- gauuCCCCGUGaCGGG-----UGAGUuGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 125788 | 0.68 | 0.816811 |
Target: 5'- -gAAGGGGCGCgGCgUCGaaggcggaUCAAUCCCa -3' miRNA: 3'- gaUUCCCCGUGaCG-GGUg-------AGUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 56287 | 0.68 | 0.825253 |
Target: 5'- -gGGGGGGUGgUGCCUggcGCgc-GCCCCa -3' miRNA: 3'- gaUUCCCCGUgACGGG---UGaguUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 39584 | 0.68 | 0.816811 |
Target: 5'- cCUGGGGGGCugUuguguuuugGCUgACcUGACCCCc -3' miRNA: 3'- -GAUUCCCCGugA---------CGGgUGaGUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 75507 | 0.68 | 0.824417 |
Target: 5'- -aGGGGGGCGCUGuUCCAgguuugcgcgcgcCUC-GCCCUc -3' miRNA: 3'- gaUUCCCCGUGAC-GGGU-------------GAGuUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 134129 | 0.68 | 0.825253 |
Target: 5'- uCUGGGGGGCGCc-CCCAgCUguACUCUg -3' miRNA: 3'- -GAUUCCCCGUGacGGGU-GAguUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 174959 | 0.68 | 0.825253 |
Target: 5'- aUGGGGGGC-CUGUggguaUUACUCAAUgCCCa -3' miRNA: 3'- gAUUCCCCGuGACG-----GGUGAGUUG-GGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 8252 | 0.68 | 0.825253 |
Target: 5'- aUGGGGGGC-CUGUggguaUUACUCAAUgCCCa -3' miRNA: 3'- gAUUCCCCGuGACG-----GGUGAGUUG-GGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 74468 | 0.68 | 0.833525 |
Target: 5'- uUGAGGGGUACcacagaGCCCAC-CcuCUCCu -3' miRNA: 3'- gAUUCCCCGUGa-----CGGGUGaGuuGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 170775 | 0.68 | 0.834343 |
Target: 5'- gUAGGGGGCuucCUaGCCCcCUaccagcauugcaacaGACCCCg -3' miRNA: 3'- gAUUCCCCGu--GA-CGGGuGAg--------------UUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 89308 | 0.68 | 0.799444 |
Target: 5'- -aGAGGGcGCAC-GCCCuGCU-GACCCUg -3' miRNA: 3'- gaUUCCC-CGUGaCGGG-UGAgUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 70500 | 0.68 | 0.824417 |
Target: 5'- -gAGGGGGCugguggacaccguGCUGCacgugaaGCUCAggagcGCCCCg -3' miRNA: 3'- gaUUCCCCG-------------UGACGgg-----UGAGU-----UGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 141944 | 0.68 | 0.825253 |
Target: 5'- -aGGGGGGCAaacCCC-CUCGGCCgCg -3' miRNA: 3'- gaUUCCCCGUgacGGGuGAGUUGGgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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