miRNA display CGI


Results 81 - 100 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3581 3' -56.8 NC_001650.1 + 57977 0.7 0.734481
Target:  5'- ---cGGGGCgucgauggGCUGUCCGaacCUCuGCCCCa -3'
miRNA:   3'- gauuCCCCG--------UGACGGGU---GAGuUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 108945 0.7 0.695266
Target:  5'- cCUGAGGGGCucggggaagagGCUGUCUuugACgccccccgCGACCCCc -3'
miRNA:   3'- -GAUUCCCCG-----------UGACGGG---UGa-------GUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 109476 0.7 0.724785
Target:  5'- ---cGGGGCGCccCCCACUaucgccACCCCg -3'
miRNA:   3'- gauuCCCCGUGacGGGUGAgu----UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 83894 0.7 0.695266
Target:  5'- ---cGGGGCAgCgGCUC-CUCAGCCUCg -3'
miRNA:   3'- gauuCCCCGU-GaCGGGuGAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 136051 0.69 0.753606
Target:  5'- -cGAGGGGCAgaGagUACUCccccAGCCCCg -3'
miRNA:   3'- gaUUCCCCGUgaCggGUGAG----UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 50667 0.69 0.760204
Target:  5'- -cGGGGGGCcugaccuucuaccuGCUGCCCG--UGACCCUg -3'
miRNA:   3'- gaUUCCCCG--------------UGACGGGUgaGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 49748 0.69 0.763017
Target:  5'- --uAGGGGCACcgUGCCCGgCgcgCAGCCg- -3'
miRNA:   3'- gauUCCCCGUG--ACGGGU-Ga--GUUGGgg -5'
3581 3' -56.8 NC_001650.1 + 31303 0.69 0.772314
Target:  5'- --cGGGGGCGCU--UCAUgCGACCCCa -3'
miRNA:   3'- gauUCCCCGUGAcgGGUGaGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 133433 0.69 0.781491
Target:  5'- ----cGGGCg--GCCCGCUCccAGCCCCc -3'
miRNA:   3'- gauucCCCGugaCGGGUGAG--UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 71884 0.69 0.744091
Target:  5'- --uGGGGGaugUUGCCCAC-CAugCCCc -3'
miRNA:   3'- gauUCCCCgu-GACGGGUGaGUugGGG- -5'
3581 3' -56.8 NC_001650.1 + 48031 0.69 0.781491
Target:  5'- -aAAGaGGGCgGCgGCCCugUCuGCCCg -3'
miRNA:   3'- gaUUC-CCCG-UGaCGGGugAGuUGGGg -5'
3581 3' -56.8 NC_001650.1 + 57460 0.69 0.781491
Target:  5'- ---cGGGGCGCaGCagcaacagCCGCccCAACCCCa -3'
miRNA:   3'- gauuCCCCGUGaCG--------GGUGa-GUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 157498 0.69 0.790537
Target:  5'- --cGGGGGCggggaGgUGCCCccaggcgcauggGCUaCAGCCCCg -3'
miRNA:   3'- gauUCCCCG-----UgACGGG------------UGA-GUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 78181 0.69 0.763017
Target:  5'- cCUGAGcuugguGGGCGCgacgGCCC-CUCGguGCCUCg -3'
miRNA:   3'- -GAUUC------CCCGUGa---CGGGuGAGU--UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 122272 0.69 0.781491
Target:  5'- -cAGGGGGCGCcugaUGUggGC-CAGCCCCg -3'
miRNA:   3'- gaUUCCCCGUG----ACGggUGaGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 70500 0.68 0.824417
Target:  5'- -gAGGGGGCugguggacaccguGCUGCacgugaaGCUCAggagcGCCCCg -3'
miRNA:   3'- gaUUCCCCG-------------UGACGgg-----UGAGU-----UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 141944 0.68 0.825253
Target:  5'- -aGGGGGGCAaacCCC-CUCGGCCgCg -3'
miRNA:   3'- gaUUCCCCGUgacGGGuGAGUUGGgG- -5'
3581 3' -56.8 NC_001650.1 + 56287 0.68 0.825253
Target:  5'- -gGGGGGGUGgUGCCUggcGCgc-GCCCCa -3'
miRNA:   3'- gaUUCCCCGUgACGGG---UGaguUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 45210 0.68 0.816811
Target:  5'- ---cGGGGCGCgGUUCcacggGCUCAcCCCCa -3'
miRNA:   3'- gauuCCCCGUGaCGGG-----UGAGUuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 125788 0.68 0.816811
Target:  5'- -gAAGGGGCGCgGCgUCGaaggcggaUCAAUCCCa -3'
miRNA:   3'- gaUUCCCCGUGaCG-GGUg-------AGUUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.