miRNA display CGI


Results 121 - 140 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3581 3' -56.8 NC_001650.1 + 51006 0.68 0.808205
Target:  5'- --cGGGGGCGCggGCgCGg-CGGCCCCc -3'
miRNA:   3'- gauUCCCCGUGa-CGgGUgaGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 174959 0.68 0.825253
Target:  5'- aUGGGGGGC-CUGUggguaUUACUCAAUgCCCa -3'
miRNA:   3'- gAUUCCCCGuGACG-----GGUGAGUUG-GGG- -5'
3581 3' -56.8 NC_001650.1 + 8252 0.68 0.825253
Target:  5'- aUGGGGGGC-CUGUggguaUUACUCAAUgCCCa -3'
miRNA:   3'- gAUUCCCCGuGACG-----GGUGAGUUG-GGG- -5'
3581 3' -56.8 NC_001650.1 + 129443 0.68 0.808205
Target:  5'- -gGAGuGGGCgucggacaGCUuCCC-CUCGACCCCc -3'
miRNA:   3'- gaUUC-CCCG--------UGAcGGGuGAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 8134 0.68 0.808205
Target:  5'- --uGGGGGa--UGUCCACU-AGCCCCu -3'
miRNA:   3'- gauUCCCCgugACGGGUGAgUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 174841 0.68 0.808205
Target:  5'- --uGGGGGa--UGUCCACU-AGCCCCu -3'
miRNA:   3'- gauUCCCCgugACGGGUGAgUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 53056 0.68 0.807336
Target:  5'- -aGAGGaGGCGC-GCCCGCUCccagggcgggcagGGCgCCg -3'
miRNA:   3'- gaUUCC-CCGUGaCGGGUGAG-------------UUGgGG- -5'
3581 3' -56.8 NC_001650.1 + 30234 0.68 0.799444
Target:  5'- -gGAGGGGuCGCaguaGCCCAggaggcugacCUCGGCCgCCa -3'
miRNA:   3'- gaUUCCCC-GUGa---CGGGU----------GAGUUGG-GG- -5'
3581 3' -56.8 NC_001650.1 + 155977 0.68 0.799444
Target:  5'- --uGGGGGCGgccgugcugugcCUGCCCGgCUgCAccgaGCCCCu -3'
miRNA:   3'- gauUCCCCGU------------GACGGGU-GA-GU----UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 159984 0.68 0.807336
Target:  5'- uCUcuGGGGcCACcuaguggccucuuUGCUC-CUCAACCCCc -3'
miRNA:   3'- -GAuuCCCC-GUG-------------ACGGGuGAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 171909 0.68 0.799444
Target:  5'- --uAGGGGCcCUGCCaggcauggggaACUCu-CCCCa -3'
miRNA:   3'- gauUCCCCGuGACGGg----------UGAGuuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 89308 0.68 0.799444
Target:  5'- -aGAGGGcGCAC-GCCCuGCU-GACCCUg -3'
miRNA:   3'- gaUUCCC-CGUGaCGGG-UGAgUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 174635 0.68 0.799444
Target:  5'- -aGAGGGGCuaguggACUccCCCAUUgGGCCCCc -3'
miRNA:   3'- gaUUCCCCG------UGAc-GGGUGAgUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 4068 0.68 0.834343
Target:  5'- gUAGGGGGCuucCUaGCCCcCUaccagcauugcaacaGACCCCg -3'
miRNA:   3'- gAUUCCCCGu--GA-CGGGuGAg--------------UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 170775 0.68 0.834343
Target:  5'- gUAGGGGGCuucCUaGCCCcCUaccagcauugcaacaGACCCCg -3'
miRNA:   3'- gAUUCCCCGu--GA-CGGGuGAg--------------UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 74468 0.68 0.833525
Target:  5'- uUGAGGGGUACcacagaGCCCAC-CcuCUCCu -3'
miRNA:   3'- gAUUCCCCGUGa-----CGGGUGaGuuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 22574 0.68 0.832706
Target:  5'- ----cGGGUccuccccGCUGCCCAC-CAcCCCCa -3'
miRNA:   3'- gauucCCCG-------UGACGGGUGaGUuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 46363 0.68 0.808205
Target:  5'- ---cGGGGCGCgGCgCCGCaUCGGCCg- -3'
miRNA:   3'- gauuCCCCGUGaCG-GGUG-AGUUGGgg -5'
3581 3' -56.8 NC_001650.1 + 30470 0.67 0.849529
Target:  5'- -cAGGGGGguCUcGCCCAUcCcGCCCg -3'
miRNA:   3'- gaUUCCCCguGA-CGGGUGaGuUGGGg -5'
3581 3' -56.8 NC_001650.1 + 94482 0.67 0.849529
Target:  5'- -cGAGGcGGC---GCUC-CUCAACCCCg -3'
miRNA:   3'- gaUUCC-CCGugaCGGGuGAGUUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.