Results 141 - 160 of 228 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3581 | 3' | -56.8 | NC_001650.1 | + | 21380 | 0.67 | 0.854951 |
Target: 5'- -aGGGGGGCgcgcgACuguguacuucuacgUGCCCACguggcagcaCGGCCCCg -3' miRNA: 3'- gaUUCCCCG-----UG--------------ACGGGUGa--------GUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 31259 | 0.67 | 0.856483 |
Target: 5'- -aAGGGGGCggaggccAUUGCCgACgcggAGCCCCu -3' miRNA: 3'- gaUUCCCCG-------UGACGGgUGag--UUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 82273 | 0.67 | 0.856483 |
Target: 5'- -gAGGGGGUcccggaggagggaGCccCCCGCUC-GCCCCa -3' miRNA: 3'- gaUUCCCCG-------------UGacGGGUGAGuUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 133929 | 0.67 | 0.857246 |
Target: 5'- --uGGGGGCGCccCCCA---GACCCCg -3' miRNA: 3'- gauUCCCCGUGacGGGUgagUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 77968 | 0.67 | 0.864766 |
Target: 5'- -cGAGGGGCcgucGC-GCCCAC-CAAgCUCa -3' miRNA: 3'- gaUUCCCCG----UGaCGGGUGaGUUgGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 31480 | 0.67 | 0.844805 |
Target: 5'- uUGAGGGGCuccgcgucggcaaugGCcuccGCCCcCUUcGCCCCa -3' miRNA: 3'- gAUUCCCCG---------------UGa---CGGGuGAGuUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 7468 | 0.67 | 0.841619 |
Target: 5'- --uGGGGGCuacccACUGCaCC-CUCGgccaauaaagACCCCg -3' miRNA: 3'- gauUCCCCG-----UGACG-GGuGAGU----------UGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 131691 | 0.67 | 0.841619 |
Target: 5'- -gAAGGGGUugU-CCCGCgcgGACCCg -3' miRNA: 3'- gaUUCCCCGugAcGGGUGag-UUGGGg -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 138421 | 0.67 | 0.841619 |
Target: 5'- ---uGGGGacgacugcccuaCAUUGCCCAC-CAgccuGCCCCa -3' miRNA: 3'- gauuCCCC------------GUGACGGGUGaGU----UGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 110928 | 0.67 | 0.840015 |
Target: 5'- gCUGAGGcuguugcugcugcGGCAgccuggcCUGCCCGCUgGGUCCCg -3' miRNA: 3'- -GAUUCC-------------CCGU-------GACGGGUGAgUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 122445 | 0.67 | 0.849529 |
Target: 5'- ---uGGGGCACcucGCCC-C-CGGCCUCg -3' miRNA: 3'- gauuCCCCGUGa--CGGGuGaGUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 111483 | 0.67 | 0.849529 |
Target: 5'- -gGGGcGGGCACUGCUgCGggCGagGCCCCa -3' miRNA: 3'- gaUUC-CCCGUGACGG-GUgaGU--UGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 30470 | 0.67 | 0.849529 |
Target: 5'- -cAGGGGGguCUcGCCCAUcCcGCCCg -3' miRNA: 3'- gaUUCCCCguGA-CGGGUGaGuUGGGg -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 35172 | 0.67 | 0.87919 |
Target: 5'- --cGGGGGUGgUGCCCcacAC-CAGCaCCCu -3' miRNA: 3'- gauUCCCCGUgACGGG---UGaGUUG-GGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 5825 | 0.67 | 0.87919 |
Target: 5'- -aGAGuGGGCAg-GCCCcCUaGGCCCCc -3' miRNA: 3'- gaUUC-CCCGUgaCGGGuGAgUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 37348 | 0.67 | 0.87919 |
Target: 5'- ---cGGGGUucugcgacgaGCUGgCCGCUCAcaugACCCg -3' miRNA: 3'- gauuCCCCG----------UGACgGGUGAGU----UGGGg -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 50542 | 0.67 | 0.87708 |
Target: 5'- -cGAGGuGGCcuuccuggcgguggAgUGCCCGCgCAACCCg -3' miRNA: 3'- gaUUCC-CCG--------------UgACGGGUGaGUUGGGg -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 97853 | 0.67 | 0.872082 |
Target: 5'- ----cGGGUcacggccaccaGCUGCCCcCUCGcGCCCCa -3' miRNA: 3'- gauucCCCG-----------UGACGGGuGAGU-UGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 172532 | 0.67 | 0.87919 |
Target: 5'- -aGAGuGGGCAg-GCCCcCUaGGCCCCc -3' miRNA: 3'- gaUUC-CCCGUgaCGGGuGAgUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 129232 | 0.67 | 0.867717 |
Target: 5'- -cGAGGGGaagcuguccgacgccCACUcccuggugGCCCGCUCcGCCgCCa -3' miRNA: 3'- gaUUCCCC---------------GUGA--------CGGGUGAGuUGG-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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