Results 61 - 80 of 228 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
3581 | 3' | -56.8 | NC_001650.1 | + | 37453 | 0.71 | 0.675316 |
Target: 5'- --cGGGGGCGCacuccacccgccUGCCCAauaugucugcCAGCCCCu -3' miRNA: 3'- gauUCCCCGUG------------ACGGGUga--------GUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 49863 | 0.7 | 0.685313 |
Target: 5'- -aGAGGGGCAagGCCCAC----CCCCa -3' miRNA: 3'- gaUUCCCCGUgaCGGGUGaguuGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 78959 | 0.7 | 0.685313 |
Target: 5'- --uGGGGGCGCagaUGCCC-CgCGGCCCa -3' miRNA: 3'- gauUCCCCGUG---ACGGGuGaGUUGGGg -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 83894 | 0.7 | 0.695266 |
Target: 5'- ---cGGGGCAgCgGCUC-CUCAGCCUCg -3' miRNA: 3'- gauuCCCCGU-GaCGGGuGAGUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 76640 | 0.7 | 0.695266 |
Target: 5'- -gAAGGcGCGC-GCCUuCUCGGCCCCc -3' miRNA: 3'- gaUUCCcCGUGaCGGGuGAGUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 108945 | 0.7 | 0.695266 |
Target: 5'- cCUGAGGGGCucggggaagagGCUGUCUuugACgccccccgCGACCCCc -3' miRNA: 3'- -GAUUCCCCG-----------UGACGGG---UGa-------GUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 90810 | 0.7 | 0.705169 |
Target: 5'- gUGGGGGGCagguugauGCUGUCCAC-CAGgUCCu -3' miRNA: 3'- gAUUCCCCG--------UGACGGGUGaGUUgGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 31028 | 0.7 | 0.712065 |
Target: 5'- -cGGGGGGCGCccuCCCACUUuuuugacgcgcacaGACCCUc -3' miRNA: 3'- gaUUCCCCGUGac-GGGUGAG--------------UUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 27598 | 0.7 | 0.715011 |
Target: 5'- ----cGGGCG-UGCCCGcCUCGGCCCUc -3' miRNA: 3'- gauucCCCGUgACGGGU-GAGUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 68681 | 0.7 | 0.724785 |
Target: 5'- -cAGGGGGCGCcGUCUcucccccgGCUCAaagagcGCCCCc -3' miRNA: 3'- gaUUCCCCGUGaCGGG--------UGAGU------UGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 109476 | 0.7 | 0.724785 |
Target: 5'- ---cGGGGCGCccCCCACUaucgccACCCCg -3' miRNA: 3'- gauuCCCCGUGacGGGUGAgu----UGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 129051 | 0.7 | 0.724785 |
Target: 5'- ---uGGaGGCGgUGgCCGCgcgCGACCCCg -3' miRNA: 3'- gauuCC-CCGUgACgGGUGa--GUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 77252 | 0.7 | 0.724785 |
Target: 5'- --cAGGGGCACgagaCCAC-CGACUCCu -3' miRNA: 3'- gauUCCCCGUGacg-GGUGaGUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 22984 | 0.7 | 0.731581 |
Target: 5'- -gAGGGGGUcuucaagaccuucgGCUGCCgGgUCAGCCUg -3' miRNA: 3'- gaUUCCCCG--------------UGACGGgUgAGUUGGGg -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 13640 | 0.7 | 0.734481 |
Target: 5'- gCUGAGGGGgaCGCUGCCa----GACCCUg -3' miRNA: 3'- -GAUUCCCC--GUGACGGgugagUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 57977 | 0.7 | 0.734481 |
Target: 5'- ---cGGGGCgucgauggGCUGUCCGaacCUCuGCCCCa -3' miRNA: 3'- gauuCCCCG--------UGACGGGU---GAGuUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 48252 | 0.7 | 0.734481 |
Target: 5'- -cGAGGGGgGCUGCUUccagGCggcUAGCCCCc -3' miRNA: 3'- gaUUCCCCgUGACGGG----UGa--GUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 49657 | 0.7 | 0.734481 |
Target: 5'- cCUGGGGGuGgGCcuUGCCC-CUCuacGCCCCc -3' miRNA: 3'- -GAUUCCC-CgUG--ACGGGuGAGu--UGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 164668 | 0.7 | 0.734481 |
Target: 5'- ---cGGGGgACcGCggCGCUCAACCCCc -3' miRNA: 3'- gauuCCCCgUGaCGg-GUGAGUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 52997 | 0.7 | 0.734481 |
Target: 5'- -cGAGGcGCGCUGCCuCGC---GCCCCg -3' miRNA: 3'- gaUUCCcCGUGACGG-GUGaguUGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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