miRNA display CGI


Results 101 - 120 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3581 3' -56.8 NC_001650.1 + 30234 0.68 0.799444
Target:  5'- -gGAGGGGuCGCaguaGCCCAggaggcugacCUCGGCCgCCa -3'
miRNA:   3'- gaUUCCCC-GUGa---CGGGU----------GAGUUGG-GG- -5'
3581 3' -56.8 NC_001650.1 + 5202 0.68 0.799444
Target:  5'- --uAGGGGCcCUGCCaggcauggggaACUCu-CCCCa -3'
miRNA:   3'- gauUCCCCGuGACGGg----------UGAGuuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 598 0.68 0.799444
Target:  5'- -gAGGGGGCgaggccggGCUGCCgCcCUCccccgGGCCCCc -3'
miRNA:   3'- gaUUCCCCG--------UGACGG-GuGAG-----UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 171909 0.68 0.799444
Target:  5'- --uAGGGGCcCUGCCaggcauggggaACUCu-CCCCa -3'
miRNA:   3'- gauUCCCCGuGACGGg----------UGAGuuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 53056 0.68 0.807336
Target:  5'- -aGAGGaGGCGC-GCCCGCUCccagggcgggcagGGCgCCg -3'
miRNA:   3'- gaUUCC-CCGUGaCGGGUGAG-------------UUGgGG- -5'
3581 3' -56.8 NC_001650.1 + 159984 0.68 0.807336
Target:  5'- uCUcuGGGGcCACcuaguggccucuuUGCUC-CUCAACCCCc -3'
miRNA:   3'- -GAuuCCCC-GUG-------------ACGGGuGAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 46363 0.68 0.808205
Target:  5'- ---cGGGGCGCgGCgCCGCaUCGGCCg- -3'
miRNA:   3'- gauuCCCCGUGaCG-GGUG-AGUUGGgg -5'
3581 3' -56.8 NC_001650.1 + 51006 0.68 0.808205
Target:  5'- --cGGGGGCGCggGCgCGg-CGGCCCCc -3'
miRNA:   3'- gauUCCCCGUGa-CGgGUgaGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 8134 0.68 0.808205
Target:  5'- --uGGGGGa--UGUCCACU-AGCCCCu -3'
miRNA:   3'- gauUCCCCgugACGGGUGAgUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 18186 0.68 0.808205
Target:  5'- gUGGGGGGCGCU-CUUcUUCAcCCCCg -3'
miRNA:   3'- gAUUCCCCGUGAcGGGuGAGUuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 129443 0.68 0.808205
Target:  5'- -gGAGuGGGCgucggacaGCUuCCC-CUCGACCCCc -3'
miRNA:   3'- gaUUC-CCCG--------UGAcGGGuGAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 174841 0.68 0.808205
Target:  5'- --uGGGGGa--UGUCCACU-AGCCCCu -3'
miRNA:   3'- gauUCCCCgugACGGGUGAgUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 156867 0.68 0.808205
Target:  5'- uCUcGGGGGCAUcgGCCaGCUCGagaGCCUCc -3'
miRNA:   3'- -GAuUCCCCGUGa-CGGgUGAGU---UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 101801 0.68 0.808205
Target:  5'- -aGAGGGGC--UGCCCGCUgGcggagaagauACCCg -3'
miRNA:   3'- gaUUCCCCGugACGGGUGAgU----------UGGGg -5'
3581 3' -56.8 NC_001650.1 + 42467 0.68 0.815957
Target:  5'- ---cGGGGCuauGCUaCCCugUCAuccaggaACCCCa -3'
miRNA:   3'- gauuCCCCG---UGAcGGGugAGU-------UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 125788 0.68 0.816811
Target:  5'- -gAAGGGGCGCgGCgUCGaaggcggaUCAAUCCCa -3'
miRNA:   3'- gaUUCCCCGUGaCG-GGUg-------AGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 131083 0.68 0.816811
Target:  5'- uCUcGGGGGCGCUcuuguccaGCCCcccgguCUUGGCCUCg -3'
miRNA:   3'- -GAuUCCCCGUGA--------CGGGu-----GAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 45210 0.68 0.816811
Target:  5'- ---cGGGGCGCgGUUCcacggGCUCAcCCCCa -3'
miRNA:   3'- gauuCCCCGUGaCGGG-----UGAGUuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 155275 0.68 0.816811
Target:  5'- -cAGGGacggcaGGCACcuggGCCUGCUCugcGACCCCu -3'
miRNA:   3'- gaUUCC------CCGUGa---CGGGUGAG---UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 51216 0.68 0.816811
Target:  5'- -gAGGGGGcCGCcgcGCCCGCgc--CCCCg -3'
miRNA:   3'- gaUUCCCC-GUGa--CGGGUGaguuGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.