miRNA display CGI


Results 121 - 140 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3581 3' -56.8 NC_001650.1 + 51216 0.68 0.816811
Target:  5'- -gAGGGGGcCGCcgcGCCCGCgc--CCCCg -3'
miRNA:   3'- gaUUCCCC-GUGa--CGGGUGaguuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 70500 0.68 0.824417
Target:  5'- -gAGGGGGCugguggacaccguGCUGCacgugaaGCUCAggagcGCCCCg -3'
miRNA:   3'- gaUUCCCCG-------------UGACGgg-----UGAGU-----UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 75507 0.68 0.824417
Target:  5'- -aGGGGGGCGCUGuUCCAgguuugcgcgcgcCUC-GCCCUc -3'
miRNA:   3'- gaUUCCCCGUGAC-GGGU-------------GAGuUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 59046 0.68 0.824417
Target:  5'- --uGGGGGCucauCUGCCUcucccggGCcCGAUCCCa -3'
miRNA:   3'- gauUCCCCGu---GACGGG-------UGaGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 8252 0.68 0.825253
Target:  5'- aUGGGGGGC-CUGUggguaUUACUCAAUgCCCa -3'
miRNA:   3'- gAUUCCCCGuGACG-----GGUGAGUUG-GGG- -5'
3581 3' -56.8 NC_001650.1 + 56287 0.68 0.825253
Target:  5'- -gGGGGGGUGgUGCCUggcGCgc-GCCCCa -3'
miRNA:   3'- gaUUCCCCGUgACGGG---UGaguUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 141944 0.68 0.825253
Target:  5'- -aGGGGGGCAaacCCC-CUCGGCCgCg -3'
miRNA:   3'- gaUUCCCCGUgacGGGuGAGUUGGgG- -5'
3581 3' -56.8 NC_001650.1 + 174959 0.68 0.825253
Target:  5'- aUGGGGGGC-CUGUggguaUUACUCAAUgCCCa -3'
miRNA:   3'- gAUUCCCCGuGACG-----GGUGAGUUG-GGG- -5'
3581 3' -56.8 NC_001650.1 + 92978 0.68 0.825253
Target:  5'- -gAAGGGGCAgacccUCCACUCgAGCCUCa -3'
miRNA:   3'- gaUUCCCCGUgac--GGGUGAG-UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 134129 0.68 0.825253
Target:  5'- uCUGGGGGGCGCc-CCCAgCUguACUCUg -3'
miRNA:   3'- -GAUUCCCCGUGacGGGU-GAguUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 22574 0.68 0.832706
Target:  5'- ----cGGGUccuccccGCUGCCCAC-CAcCCCCa -3'
miRNA:   3'- gauucCCCG-------UGACGGGUGaGUuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 7928 0.68 0.832706
Target:  5'- -aGAGGGGCuAgUGgacauccCCCAUUgGGCCCCc -3'
miRNA:   3'- gaUUCCCCG-UgAC-------GGGUGAgUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 128751 0.68 0.833525
Target:  5'- -aGGGGGGCGCcgUGUCCAg--GACCCUg -3'
miRNA:   3'- gaUUCCCCGUG--ACGGGUgagUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 3992 0.68 0.833525
Target:  5'- ---cGGGGCggaGCUcGCCCACggaCAGaguCCCCa -3'
miRNA:   3'- gauuCCCCG---UGA-CGGGUGa--GUU---GGGG- -5'
3581 3' -56.8 NC_001650.1 + 170699 0.68 0.833525
Target:  5'- ---cGGGGCggaGCUcGCCCACggaCAGaguCCCCa -3'
miRNA:   3'- gauuCCCCG---UGA-CGGGUGa--GUU---GGGG- -5'
3581 3' -56.8 NC_001650.1 + 74468 0.68 0.833525
Target:  5'- uUGAGGGGUACcacagaGCCCAC-CcuCUCCu -3'
miRNA:   3'- gAUUCCCCGUGa-----CGGGUGaGuuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 170775 0.68 0.834343
Target:  5'- gUAGGGGGCuucCUaGCCCcCUaccagcauugcaacaGACCCCg -3'
miRNA:   3'- gAUUCCCCGu--GA-CGGGuGAg--------------UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 4068 0.68 0.834343
Target:  5'- gUAGGGGGCuucCUaGCCCcCUaccagcauugcaacaGACCCCg -3'
miRNA:   3'- gAUUCCCCGu--GA-CGGGuGAg--------------UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 110928 0.67 0.840015
Target:  5'- gCUGAGGcuguugcugcugcGGCAgccuggcCUGCCCGCUgGGUCCCg -3'
miRNA:   3'- -GAUUCC-------------CCGU-------GACGGGUGAgUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 174175 0.67 0.841619
Target:  5'- --uGGGGGCuacccACUGCaCC-CUCGgccaauaaagACCCCg -3'
miRNA:   3'- gauUCCCCG-----UGACG-GGuGAGU----------UGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.