miRNA display CGI


Results 161 - 180 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3581 3' -56.8 NC_001650.1 + 165752 0.67 0.864766
Target:  5'- -cAAGuGcuGCAgCUGCCCGCUCAacaGCCCUc -3'
miRNA:   3'- gaUUC-Cc-CGU-GACGGGUGAGU---UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 129232 0.67 0.867717
Target:  5'- -cGAGGGGaagcuguccgacgccCACUcccuggugGCCCGCUCcGCCgCCa -3'
miRNA:   3'- gaUUCCCC---------------GUGA--------CGGGUGAGuUGG-GG- -5'
3581 3' -56.8 NC_001650.1 + 97853 0.67 0.872082
Target:  5'- ----cGGGUcacggccaccaGCUGCCCcCUCGcGCCCCa -3'
miRNA:   3'- gauucCCCG-----------UGACGGGuGAGU-UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 21965 0.67 0.872082
Target:  5'- -cAGGGGGCGCcGCagCugUUgcuGCCCCc -3'
miRNA:   3'- gaUUCCCCGUGaCGg-GugAGu--UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 31135 0.67 0.872082
Target:  5'- ----cGGGCGgUG-CCAC-CGACCCCg -3'
miRNA:   3'- gauucCCCGUgACgGGUGaGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 105616 0.67 0.872082
Target:  5'- -aGAGGGGUACU-UCUACUUAucuGCCUCu -3'
miRNA:   3'- gaUUCCCCGUGAcGGGUGAGU---UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 63202 0.67 0.872082
Target:  5'- aUGAGGGuCGucUUGCCCACccccaUgGACCCCu -3'
miRNA:   3'- gAUUCCCcGU--GACGGGUG-----AgUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 50542 0.67 0.87708
Target:  5'- -cGAGGuGGCcuuccuggcgguggAgUGCCCGCgCAACCCg -3'
miRNA:   3'- gaUUCC-CCG--------------UgACGGGUGaGUUGGGg -5'
3581 3' -56.8 NC_001650.1 + 111442 0.67 0.87919
Target:  5'- ---uGGGGCAgcauCUGCCUcCUCucuCCCUg -3'
miRNA:   3'- gauuCCCCGU----GACGGGuGAGuu-GGGG- -5'
3581 3' -56.8 NC_001650.1 + 129353 0.67 0.87919
Target:  5'- -gAAGaGGGC-C-GCCCccgugucCUCGGCCCCg -3'
miRNA:   3'- gaUUC-CCCGuGaCGGGu------GAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 138135 0.67 0.87919
Target:  5'- gUGAGGcugaGGCGCUGCCacagAUUCcuGCCCUg -3'
miRNA:   3'- gAUUCC----CCGUGACGGg---UGAGu-UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 165559 0.67 0.87919
Target:  5'- --uAGGGGCucGCcGCCUucuUUCAACCCg -3'
miRNA:   3'- gauUCCCCG--UGaCGGGu--GAGUUGGGg -5'
3581 3' -56.8 NC_001650.1 + 5825 0.67 0.87919
Target:  5'- -aGAGuGGGCAg-GCCCcCUaGGCCCCc -3'
miRNA:   3'- gaUUC-CCCGUgaCGGGuGAgUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 35172 0.67 0.87919
Target:  5'- --cGGGGGUGgUGCCCcacAC-CAGCaCCCu -3'
miRNA:   3'- gauUCCCCGUgACGGG---UGaGUUG-GGG- -5'
3581 3' -56.8 NC_001650.1 + 37348 0.67 0.87919
Target:  5'- ---cGGGGUucugcgacgaGCUGgCCGCUCAcaugACCCg -3'
miRNA:   3'- gauuCCCCG----------UGACgGGUGAGU----UGGGg -5'
3581 3' -56.8 NC_001650.1 + 172532 0.67 0.87919
Target:  5'- -aGAGuGGGCAg-GCCCcCUaGGCCCCc -3'
miRNA:   3'- gaUUC-CCCGUgaCGGGuGAgUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 75460 0.66 0.882664
Target:  5'- -aGAGGGGCugucgcuggaacgGCUGCCCucCUCuggcgaucguguuGCCCg -3'
miRNA:   3'- gaUUCCCCG-------------UGACGGGu-GAGu------------UGGGg -5'
3581 3' -56.8 NC_001650.1 + 58552 0.66 0.886084
Target:  5'- --uGGGGGUGucGCCCccCUUGGCCCCg -3'
miRNA:   3'- gauUCCCCGUgaCGGGu-GAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 67325 0.66 0.886084
Target:  5'- --cAGGGGCAC-GUCgCugUCGGcgguCCCCa -3'
miRNA:   3'- gauUCCCCGUGaCGG-GugAGUU----GGGG- -5'
3581 3' -56.8 NC_001650.1 + 107634 0.66 0.886084
Target:  5'- gUGGGGaGGCuCUGCUgACUCuAugCCUg -3'
miRNA:   3'- gAUUCC-CCGuGACGGgUGAG-UugGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.