miRNA display CGI


Results 81 - 100 of 228 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3581 3' -56.8 NC_001650.1 + 122445 0.67 0.849529
Target:  5'- ---uGGGGCACcucGCCC-C-CGGCCUCg -3'
miRNA:   3'- gauuCCCCGUGa--CGGGuGaGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 111483 0.67 0.849529
Target:  5'- -gGGGcGGGCACUGCUgCGggCGagGCCCCa -3'
miRNA:   3'- gaUUC-CCCGUGACGG-GUgaGU--UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 94482 0.67 0.849529
Target:  5'- -cGAGGcGGC---GCUC-CUCAACCCCg -3'
miRNA:   3'- gaUUCC-CCGugaCGGGuGAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 30470 0.67 0.849529
Target:  5'- -cAGGGGGguCUcGCCCAUcCcGCCCg -3'
miRNA:   3'- gaUUCCCCguGA-CGGGUGaGuUGGGg -5'
3581 3' -56.8 NC_001650.1 + 31480 0.67 0.844805
Target:  5'- uUGAGGGGCuccgcgucggcaaugGCcuccGCCCcCUUcGCCCCa -3'
miRNA:   3'- gAUUCCCCG---------------UGa---CGGGuGAGuUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 131691 0.67 0.841619
Target:  5'- -gAAGGGGUugU-CCCGCgcgGACCCg -3'
miRNA:   3'- gaUUCCCCGugAcGGGUGag-UUGGGg -5'
3581 3' -56.8 NC_001650.1 + 7468 0.67 0.841619
Target:  5'- --uGGGGGCuacccACUGCaCC-CUCGgccaauaaagACCCCg -3'
miRNA:   3'- gauUCCCCG-----UGACG-GGuGAGU----------UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 138421 0.67 0.841619
Target:  5'- ---uGGGGacgacugcccuaCAUUGCCCAC-CAgccuGCCCCa -3'
miRNA:   3'- gauuCCCC------------GUGACGGGUGaGU----UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 174175 0.67 0.841619
Target:  5'- --uGGGGGCuacccACUGCaCC-CUCGgccaauaaagACCCCg -3'
miRNA:   3'- gauUCCCCG-----UGACG-GGuGAGU----------UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 110928 0.67 0.840015
Target:  5'- gCUGAGGcuguugcugcugcGGCAgccuggcCUGCCCGCUgGGUCCCg -3'
miRNA:   3'- -GAUUCC-------------CCGU-------GACGGGUGAgUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 170775 0.68 0.834343
Target:  5'- gUAGGGGGCuucCUaGCCCcCUaccagcauugcaacaGACCCCg -3'
miRNA:   3'- gAUUCCCCGu--GA-CGGGuGAg--------------UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 4068 0.68 0.834343
Target:  5'- gUAGGGGGCuucCUaGCCCcCUaccagcauugcaacaGACCCCg -3'
miRNA:   3'- gAUUCCCCGu--GA-CGGGuGAg--------------UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 170699 0.68 0.833525
Target:  5'- ---cGGGGCggaGCUcGCCCACggaCAGaguCCCCa -3'
miRNA:   3'- gauuCCCCG---UGA-CGGGUGa--GUU---GGGG- -5'
3581 3' -56.8 NC_001650.1 + 3992 0.68 0.833525
Target:  5'- ---cGGGGCggaGCUcGCCCACggaCAGaguCCCCa -3'
miRNA:   3'- gauuCCCCG---UGA-CGGGUGa--GUU---GGGG- -5'
3581 3' -56.8 NC_001650.1 + 128751 0.68 0.833525
Target:  5'- -aGGGGGGCGCcgUGUCCAg--GACCCUg -3'
miRNA:   3'- gaUUCCCCGUG--ACGGGUgagUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 74468 0.68 0.833525
Target:  5'- uUGAGGGGUACcacagaGCCCAC-CcuCUCCu -3'
miRNA:   3'- gAUUCCCCGUGa-----CGGGUGaGuuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 7928 0.68 0.832706
Target:  5'- -aGAGGGGCuAgUGgacauccCCCAUUgGGCCCCc -3'
miRNA:   3'- gaUUCCCCG-UgAC-------GGGUGAgUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 22574 0.68 0.832706
Target:  5'- ----cGGGUccuccccGCUGCCCAC-CAcCCCCa -3'
miRNA:   3'- gauucCCCG-------UGACGGGUGaGUuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 92978 0.68 0.825253
Target:  5'- -gAAGGGGCAgacccUCCACUCgAGCCUCa -3'
miRNA:   3'- gaUUCCCCGUgac--GGGUGAG-UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 141944 0.68 0.825253
Target:  5'- -aGGGGGGCAaacCCC-CUCGGCCgCg -3'
miRNA:   3'- gaUUCCCCGUgacGGGuGAGUUGGgG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.