miRNA display CGI


Results 101 - 120 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3581 3' -56.8 NC_001650.1 + 92978 0.68 0.825253
Target:  5'- -gAAGGGGCAgacccUCCACUCgAGCCUCa -3'
miRNA:   3'- gaUUCCCCGUgac--GGGUGAG-UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 56287 0.68 0.825253
Target:  5'- -gGGGGGGUGgUGCCUggcGCgc-GCCCCa -3'
miRNA:   3'- gaUUCCCCGUgACGGG---UGaguUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 141944 0.68 0.825253
Target:  5'- -aGGGGGGCAaacCCC-CUCGGCCgCg -3'
miRNA:   3'- gaUUCCCCGUgacGGGuGAGUUGGgG- -5'
3581 3' -56.8 NC_001650.1 + 174959 0.68 0.825253
Target:  5'- aUGGGGGGC-CUGUggguaUUACUCAAUgCCCa -3'
miRNA:   3'- gAUUCCCCGuGACG-----GGUGAGUUG-GGG- -5'
3581 3' -56.8 NC_001650.1 + 70500 0.68 0.824417
Target:  5'- -gAGGGGGCugguggacaccguGCUGCacgugaaGCUCAggagcGCCCCg -3'
miRNA:   3'- gaUUCCCCG-------------UGACGgg-----UGAGU-----UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 75507 0.68 0.824417
Target:  5'- -aGGGGGGCGCUGuUCCAgguuugcgcgcgcCUC-GCCCUc -3'
miRNA:   3'- gaUUCCCCGUGAC-GGGU-------------GAGuUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 59046 0.68 0.824417
Target:  5'- --uGGGGGCucauCUGCCUcucccggGCcCGAUCCCa -3'
miRNA:   3'- gauUCCCCGu---GACGGG-------UGaGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 155275 0.68 0.816811
Target:  5'- -cAGGGacggcaGGCACcuggGCCUGCUCugcGACCCCu -3'
miRNA:   3'- gaUUCC------CCGUGa---CGGGUGAG---UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 131083 0.68 0.816811
Target:  5'- uCUcGGGGGCGCUcuuguccaGCCCcccgguCUUGGCCUCg -3'
miRNA:   3'- -GAuUCCCCGUGA--------CGGGu-----GAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 51216 0.68 0.816811
Target:  5'- -gAGGGGGcCGCcgcGCCCGCgc--CCCCg -3'
miRNA:   3'- gaUUCCCC-GUGa--CGGGUGaguuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 125788 0.68 0.816811
Target:  5'- -gAAGGGGCGCgGCgUCGaaggcggaUCAAUCCCa -3'
miRNA:   3'- gaUUCCCCGUGaCG-GGUg-------AGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 45210 0.68 0.816811
Target:  5'- ---cGGGGCGCgGUUCcacggGCUCAcCCCCa -3'
miRNA:   3'- gauuCCCCGUGaCGGG-----UGAGUuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 39584 0.68 0.816811
Target:  5'- cCUGGGGGGCugUuguguuuugGCUgACcUGACCCCc -3'
miRNA:   3'- -GAUUCCCCGugA---------CGGgUGaGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 42467 0.68 0.815957
Target:  5'- ---cGGGGCuauGCUaCCCugUCAuccaggaACCCCa -3'
miRNA:   3'- gauuCCCCG---UGAcGGGugAGU-------UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 156867 0.68 0.808205
Target:  5'- uCUcGGGGGCAUcgGCCaGCUCGagaGCCUCc -3'
miRNA:   3'- -GAuUCCCCGUGa-CGGgUGAGU---UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 51006 0.68 0.808205
Target:  5'- --cGGGGGCGCggGCgCGg-CGGCCCCc -3'
miRNA:   3'- gauUCCCCGUGa-CGgGUgaGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 174841 0.68 0.808205
Target:  5'- --uGGGGGa--UGUCCACU-AGCCCCu -3'
miRNA:   3'- gauUCCCCgugACGGGUGAgUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 46363 0.68 0.808205
Target:  5'- ---cGGGGCGCgGCgCCGCaUCGGCCg- -3'
miRNA:   3'- gauuCCCCGUGaCG-GGUG-AGUUGGgg -5'
3581 3' -56.8 NC_001650.1 + 129443 0.68 0.808205
Target:  5'- -gGAGuGGGCgucggacaGCUuCCC-CUCGACCCCc -3'
miRNA:   3'- gaUUC-CCCG--------UGAcGGGuGAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 101801 0.68 0.808205
Target:  5'- -aGAGGGGC--UGCCCGCUgGcggagaagauACCCg -3'
miRNA:   3'- gaUUCCCCGugACGGGUGAgU----------UGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.