miRNA display CGI


Results 121 - 140 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3581 3' -56.8 NC_001650.1 + 156867 0.68 0.808205
Target:  5'- uCUcGGGGGCAUcgGCCaGCUCGagaGCCUCc -3'
miRNA:   3'- -GAuUCCCCGUGa-CGGgUGAGU---UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 51006 0.68 0.808205
Target:  5'- --cGGGGGCGCggGCgCGg-CGGCCCCc -3'
miRNA:   3'- gauUCCCCGUGa-CGgGUgaGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 53056 0.68 0.807336
Target:  5'- -aGAGGaGGCGC-GCCCGCUCccagggcgggcagGGCgCCg -3'
miRNA:   3'- gaUUCC-CCGUGaCGGGUGAG-------------UUGgGG- -5'
3581 3' -56.8 NC_001650.1 + 159984 0.68 0.807336
Target:  5'- uCUcuGGGGcCACcuaguggccucuuUGCUC-CUCAACCCCc -3'
miRNA:   3'- -GAuuCCCC-GUG-------------ACGGGuGAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 30234 0.68 0.799444
Target:  5'- -gGAGGGGuCGCaguaGCCCAggaggcugacCUCGGCCgCCa -3'
miRNA:   3'- gaUUCCCC-GUGa---CGGGU----------GAGUUGG-GG- -5'
3581 3' -56.8 NC_001650.1 + 174635 0.68 0.799444
Target:  5'- -aGAGGGGCuaguggACUccCCCAUUgGGCCCCc -3'
miRNA:   3'- gaUUCCCCG------UGAc-GGGUGAgUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 89308 0.68 0.799444
Target:  5'- -aGAGGGcGCAC-GCCCuGCU-GACCCUg -3'
miRNA:   3'- gaUUCCC-CGUGaCGGG-UGAgUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 171909 0.68 0.799444
Target:  5'- --uAGGGGCcCUGCCaggcauggggaACUCu-CCCCa -3'
miRNA:   3'- gauUCCCCGuGACGGg----------UGAGuuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 167305 0.68 0.799444
Target:  5'- -gAGGGGGCgaggccggGCUGCCgCcCUCccccgGGCCCCc -3'
miRNA:   3'- gaUUCCCCG--------UGACGG-GuGAG-----UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 111270 0.68 0.799444
Target:  5'- ---uGGGGC-CUcGCCCGCagCAgugcccGCCCCa -3'
miRNA:   3'- gauuCCCCGuGA-CGGGUGa-GU------UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 155977 0.68 0.799444
Target:  5'- --uGGGGGCGgccgugcugugcCUGCCCGgCUgCAccgaGCCCCu -3'
miRNA:   3'- gauUCCCCGU------------GACGGGU-GA-GU----UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 5202 0.68 0.799444
Target:  5'- --uAGGGGCcCUGCCaggcauggggaACUCu-CCCCa -3'
miRNA:   3'- gauUCCCCGuGACGGg----------UGAGuuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 598 0.68 0.799444
Target:  5'- -gAGGGGGCgaggccggGCUGCCgCcCUCccccgGGCCCCc -3'
miRNA:   3'- gaUUCCCCG--------UGACGG-GuGAG-----UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 157498 0.69 0.790537
Target:  5'- --cGGGGGCggggaGgUGCCCccaggcgcauggGCUaCAGCCCCg -3'
miRNA:   3'- gauUCCCCG-----UgACGGG------------UGA-GUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 48031 0.69 0.781491
Target:  5'- -aAAGaGGGCgGCgGCCCugUCuGCCCg -3'
miRNA:   3'- gaUUC-CCCG-UGaCGGGugAGuUGGGg -5'
3581 3' -56.8 NC_001650.1 + 57460 0.69 0.781491
Target:  5'- ---cGGGGCGCaGCagcaacagCCGCccCAACCCCa -3'
miRNA:   3'- gauuCCCCGUGaCG--------GGUGa-GUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 133433 0.69 0.781491
Target:  5'- ----cGGGCg--GCCCGCUCccAGCCCCc -3'
miRNA:   3'- gauucCCCGugaCGGGUGAG--UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 122272 0.69 0.781491
Target:  5'- -cAGGGGGCGCcugaUGUggGC-CAGCCCCg -3'
miRNA:   3'- gaUUCCCCGUG----ACGggUGaGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 31303 0.69 0.772314
Target:  5'- --cGGGGGCGCU--UCAUgCGACCCCa -3'
miRNA:   3'- gauUCCCCGUGAcgGGUGaGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 49748 0.69 0.763017
Target:  5'- --uAGGGGCACcgUGCCCGgCgcgCAGCCg- -3'
miRNA:   3'- gauUCCCCGUG--ACGGGU-Ga--GUUGGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.