miRNA display CGI


Results 61 - 80 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3581 3' -56.8 NC_001650.1 + 37453 0.71 0.675316
Target:  5'- --cGGGGGCGCacuccacccgccUGCCCAauaugucugcCAGCCCCu -3'
miRNA:   3'- gauUCCCCGUG------------ACGGGUga--------GUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 38533 0.66 0.917214
Target:  5'- -cGAGGGcGUACaGCCCA----GCCCCc -3'
miRNA:   3'- gaUUCCC-CGUGaCGGGUgaguUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 39584 0.68 0.816811
Target:  5'- cCUGGGGGGCugUuguguuuugGCUgACcUGACCCCc -3'
miRNA:   3'- -GAUUCCCCGugA---------CGGgUGaGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 42467 0.68 0.815957
Target:  5'- ---cGGGGCuauGCUaCCCugUCAuccaggaACCCCa -3'
miRNA:   3'- gauuCCCCG---UGAcGGGugAGU-------UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 45210 0.68 0.816811
Target:  5'- ---cGGGGCGCgGUUCcacggGCUCAcCCCCa -3'
miRNA:   3'- gauuCCCCGUGaCGGG-----UGAGUuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 45643 0.66 0.899213
Target:  5'- --uAGGcGCcCUGCCCACU-AGCCCa -3'
miRNA:   3'- gauUCCcCGuGACGGGUGAgUUGGGg -5'
3581 3' -56.8 NC_001650.1 + 46363 0.68 0.808205
Target:  5'- ---cGGGGCGCgGCgCCGCaUCGGCCg- -3'
miRNA:   3'- gauuCCCCGUGaCG-GGUG-AGUUGGgg -5'
3581 3' -56.8 NC_001650.1 + 46387 0.74 0.47798
Target:  5'- ---cGGGGCACcagaUGCgCCGCggCGGCCCCc -3'
miRNA:   3'- gauuCCCCGUG----ACG-GGUGa-GUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 47282 0.66 0.886084
Target:  5'- -cGAGGGGC---GCCCGCgaggaUAGCCCg -3'
miRNA:   3'- gaUUCCCCGugaCGGGUGa----GUUGGGg -5'
3581 3' -56.8 NC_001650.1 + 48031 0.69 0.781491
Target:  5'- -aAAGaGGGCgGCgGCCCugUCuGCCCg -3'
miRNA:   3'- gaUUC-CCCG-UGaCGGGugAGuUGGGg -5'
3581 3' -56.8 NC_001650.1 + 48252 0.7 0.734481
Target:  5'- -cGAGGGGgGCUGCUUccagGCggcUAGCCCCc -3'
miRNA:   3'- gaUUCCCCgUGACGGG----UGa--GUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 48471 0.72 0.594783
Target:  5'- gCUAGGGGGCuaGCcGCCUggaagCAGCCCCc -3'
miRNA:   3'- -GAUUCCCCG--UGaCGGGuga--GUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 49657 0.7 0.734481
Target:  5'- cCUGGGGGuGgGCcuUGCCC-CUCuacGCCCCc -3'
miRNA:   3'- -GAUUCCC-CgUG--ACGGGuGAGu--UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 49748 0.69 0.763017
Target:  5'- --uAGGGGCACcgUGCCCGgCgcgCAGCCg- -3'
miRNA:   3'- gauUCCCCGUG--ACGGGU-Ga--GUUGGgg -5'
3581 3' -56.8 NC_001650.1 + 49863 0.7 0.685313
Target:  5'- -aGAGGGGCAagGCCCAC----CCCCa -3'
miRNA:   3'- gaUUCCCCGUgaCGGGUGaguuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 50542 0.67 0.87708
Target:  5'- -cGAGGuGGCcuuccuggcgguggAgUGCCCGCgCAACCCg -3'
miRNA:   3'- gaUUCC-CCG--------------UgACGGGUGaGUUGGGg -5'
3581 3' -56.8 NC_001650.1 + 50667 0.69 0.760204
Target:  5'- -cGGGGGGCcugaccuucuaccuGCUGCCCG--UGACCCUg -3'
miRNA:   3'- gaUUCCCCG--------------UGACGGGUgaGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 50951 0.66 0.911443
Target:  5'- ---uGGuGGCGgcGCCCACcgCGGCCCUg -3'
miRNA:   3'- gauuCC-CCGUgaCGGGUGa-GUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 51006 0.68 0.808205
Target:  5'- --cGGGGGCGCggGCgCGg-CGGCCCCc -3'
miRNA:   3'- gauUCCCCGUGa-CGgGUgaGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 51216 0.68 0.816811
Target:  5'- -gAGGGGGcCGCcgcGCCCGCgc--CCCCg -3'
miRNA:   3'- gaUUCCCC-GUGa--CGGGUGaguuGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.