miRNA display CGI


Results 101 - 120 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3581 3' -56.8 NC_001650.1 + 71651 0.75 0.432643
Target:  5'- --uGGGGGgGCUGCUCguACUCGAgCCCg -3'
miRNA:   3'- gauUCCCCgUGACGGG--UGAGUUgGGG- -5'
3581 3' -56.8 NC_001650.1 + 71884 0.69 0.744091
Target:  5'- --uGGGGGaugUUGCCCAC-CAugCCCc -3'
miRNA:   3'- gauUCCCCgu-GACGGGUGaGUugGGG- -5'
3581 3' -56.8 NC_001650.1 + 74468 0.68 0.833525
Target:  5'- uUGAGGGGUACcacagaGCCCAC-CcuCUCCu -3'
miRNA:   3'- gAUUCCCCGUGa-----CGGGUGaGuuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 75460 0.66 0.882664
Target:  5'- -aGAGGGGCugucgcuggaacgGCUGCCCucCUCuggcgaucguguuGCCCg -3'
miRNA:   3'- gaUUCCCCG-------------UGACGGGu-GAGu------------UGGGg -5'
3581 3' -56.8 NC_001650.1 + 75507 0.68 0.824417
Target:  5'- -aGGGGGGCGCUGuUCCAgguuugcgcgcgcCUC-GCCCUc -3'
miRNA:   3'- gaUUCCCCGUGAC-GGGU-------------GAGuUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 76640 0.7 0.695266
Target:  5'- -gAAGGcGCGC-GCCUuCUCGGCCCCc -3'
miRNA:   3'- gaUUCCcCGUGaCGGGuGAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 77252 0.7 0.724785
Target:  5'- --cAGGGGCACgagaCCAC-CGACUCCu -3'
miRNA:   3'- gauUCCCCGUGacg-GGUGaGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 77968 0.67 0.864766
Target:  5'- -cGAGGGGCcgucGC-GCCCAC-CAAgCUCa -3'
miRNA:   3'- gaUUCCCCG----UGaCGGGUGaGUUgGGG- -5'
3581 3' -56.8 NC_001650.1 + 78181 0.69 0.763017
Target:  5'- cCUGAGcuugguGGGCGCgacgGCCC-CUCGguGCCUCg -3'
miRNA:   3'- -GAUUC------CCCGUGa---CGGGuGAGU--UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 78959 0.7 0.685313
Target:  5'- --uGGGGGCGCagaUGCCC-CgCGGCCCa -3'
miRNA:   3'- gauUCCCCGUG---ACGGGuGaGUUGGGg -5'
3581 3' -56.8 NC_001650.1 + 81836 0.66 0.905442
Target:  5'- --cGGGGGaGCUgGCCCGCgcggCGcgcGCCCUg -3'
miRNA:   3'- gauUCCCCgUGA-CGGGUGa---GU---UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 82273 0.67 0.856483
Target:  5'- -gAGGGGGUcccggaggagggaGCccCCCGCUC-GCCCCa -3'
miRNA:   3'- gaUUCCCCG-------------UGacGGGUGAGuUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 82649 0.66 0.892759
Target:  5'- aUGAGGGGCAggGggucCCCACggcCGuCCCCu -3'
miRNA:   3'- gAUUCCCCGUgaC----GGGUGa--GUuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 83894 0.7 0.695266
Target:  5'- ---cGGGGCAgCgGCUC-CUCAGCCUCg -3'
miRNA:   3'- gauuCCCCGU-GaCGGGuGAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 83940 0.66 0.911443
Target:  5'- --cAGGGcauGCACgcGUCCACaaaagagaUCAGCCCCu -3'
miRNA:   3'- gauUCCC---CGUGa-CGGGUG--------AGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 84558 0.66 0.892759
Target:  5'- -cGAGGGGCugagggACUGUCUcgUCAACCUg -3'
miRNA:   3'- gaUUCCCCG------UGACGGGugAGUUGGGg -5'
3581 3' -56.8 NC_001650.1 + 88195 0.67 0.864766
Target:  5'- -aAGGGGGaggggGCCCGCcCAACCUa -3'
miRNA:   3'- gaUUCCCCguga-CGGGUGaGUUGGGg -5'
3581 3' -56.8 NC_001650.1 + 89116 0.66 0.911443
Target:  5'- -cGGGGGGCAucCUGCUaCAC-CAcccGCCCUu -3'
miRNA:   3'- gaUUCCCCGU--GACGG-GUGaGU---UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 89308 0.68 0.799444
Target:  5'- -aGAGGGcGCAC-GCCCuGCU-GACCCUg -3'
miRNA:   3'- gaUUCCC-CGUGaCGGG-UGAgUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 89431 0.66 0.917214
Target:  5'- -aGAGGGGCcagcaguugccGCcGCCCGCccuggcccgccUCAcgaucucgucGCCCCg -3'
miRNA:   3'- gaUUCCCCG-----------UGaCGGGUG-----------AGU----------UGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.