miRNA display CGI


Results 121 - 140 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3581 3' -56.8 NC_001650.1 + 90810 0.7 0.705169
Target:  5'- gUGGGGGGCagguugauGCUGUCCAC-CAGgUCCu -3'
miRNA:   3'- gAUUCCCCG--------UGACGGGUGaGUUgGGG- -5'
3581 3' -56.8 NC_001650.1 + 92044 0.66 0.899213
Target:  5'- ---uGGaGGUGCUGCCCAC-CA-CCgCCu -3'
miRNA:   3'- gauuCC-CCGUGACGGGUGaGUuGG-GG- -5'
3581 3' -56.8 NC_001650.1 + 92906 0.71 0.665286
Target:  5'- -cAAGaGGGCGCUGuCCCGCUgcACCUa -3'
miRNA:   3'- gaUUC-CCCGUGAC-GGGUGAguUGGGg -5'
3581 3' -56.8 NC_001650.1 + 92978 0.68 0.825253
Target:  5'- -gAAGGGGCAgacccUCCACUCgAGCCUCa -3'
miRNA:   3'- gaUUCCCCGUgac--GGGUGAG-UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 93375 0.71 0.63507
Target:  5'- cCUuuGGGGCGCUGgCCAagaugggCAcCCCCa -3'
miRNA:   3'- -GAuuCCCCGUGACgGGUga-----GUuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 94482 0.67 0.849529
Target:  5'- -cGAGGcGGC---GCUC-CUCAACCCCg -3'
miRNA:   3'- gaUUCC-CCGugaCGGGuGAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 96253 0.66 0.892759
Target:  5'- --cGGGGGCGCUGCCgAUgacagCGACagcgaguccUCCg -3'
miRNA:   3'- gauUCCCCGUGACGGgUGa----GUUG---------GGG- -5'
3581 3' -56.8 NC_001650.1 + 97853 0.67 0.872082
Target:  5'- ----cGGGUcacggccaccaGCUGCCCcCUCGcGCCCCa -3'
miRNA:   3'- gauucCCCG-----------UGACGGGuGAGU-UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 101801 0.68 0.808205
Target:  5'- -aGAGGGGC--UGCCCGCUgGcggagaagauACCCg -3'
miRNA:   3'- gaUUCCCCGugACGGGUGAgU----------UGGGg -5'
3581 3' -56.8 NC_001650.1 + 105616 0.67 0.872082
Target:  5'- -aGAGGGGUACU-UCUACUUAucuGCCUCu -3'
miRNA:   3'- gaUUCCCCGUGAcGGGUGAGU---UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 106359 0.72 0.624983
Target:  5'- -cAGGGGGCugUggGUCCACUUGACCa- -3'
miRNA:   3'- gaUUCCCCGugA--CGGGUGAGUUGGgg -5'
3581 3' -56.8 NC_001650.1 + 107634 0.66 0.886084
Target:  5'- gUGGGGaGGCuCUGCUgACUCuAugCCUg -3'
miRNA:   3'- gAUUCC-CCGuGACGGgUGAG-UugGGG- -5'
3581 3' -56.8 NC_001650.1 + 108722 0.66 0.910261
Target:  5'- -cGGGGGGCGucaaagacagccuCUuccccgaGCCC-CUCAgguGCCCCg -3'
miRNA:   3'- gaUUCCCCGU-------------GA-------CGGGuGAGU---UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 108945 0.7 0.695266
Target:  5'- cCUGAGGGGCucggggaagagGCUGUCUuugACgccccccgCGACCCCc -3'
miRNA:   3'- -GAUUCCCCG-----------UGACGGG---UGa-------GUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 109278 0.78 0.30614
Target:  5'- gUGGGGGGCGC--CCCGCUCGucGCCCUg -3'
miRNA:   3'- gAUUCCCCGUGacGGGUGAGU--UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 109476 0.7 0.724785
Target:  5'- ---cGGGGCGCccCCCACUaucgccACCCCg -3'
miRNA:   3'- gauuCCCCGUGacGGGUGAgu----UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 110928 0.67 0.840015
Target:  5'- gCUGAGGcuguugcugcugcGGCAgccuggcCUGCCCGCUgGGUCCCg -3'
miRNA:   3'- -GAUUCC-------------CCGU-------GACGGGUGAgUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 111116 0.67 0.857246
Target:  5'- ---cGGGGC-CUGCUCGCcc--CCCCa -3'
miRNA:   3'- gauuCCCCGuGACGGGUGaguuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 111270 0.68 0.799444
Target:  5'- ---uGGGGC-CUcGCCCGCagCAgugcccGCCCCa -3'
miRNA:   3'- gauuCCCCGuGA-CGGGUGa-GU------UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 111405 0.66 0.899213
Target:  5'- --uGGGGGCGCggGCCgC-CUgAGCCgCCu -3'
miRNA:   3'- gauUCCCCGUGa-CGG-GuGAgUUGG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.