miRNA display CGI


Results 141 - 160 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3581 3' -56.8 NC_001650.1 + 111442 0.67 0.87919
Target:  5'- ---uGGGGCAgcauCUGCCUcCUCucuCCCUg -3'
miRNA:   3'- gauuCCCCGU----GACGGGuGAGuu-GGGG- -5'
3581 3' -56.8 NC_001650.1 + 111483 0.67 0.849529
Target:  5'- -gGGGcGGGCACUGCUgCGggCGagGCCCCa -3'
miRNA:   3'- gaUUC-CCCGUGACGG-GUgaGU--UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 112192 0.74 0.468721
Target:  5'- --cAGGGG-GCUGCCCAcCUUAACCUCc -3'
miRNA:   3'- gauUCCCCgUGACGGGU-GAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 117333 0.66 0.905442
Target:  5'- --cGGGGGCgacgucuccaaGCUGCCC-C-CG-CCCCu -3'
miRNA:   3'- gauUCCCCG-----------UGACGGGuGaGUuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 117673 0.67 0.857246
Target:  5'- gUGGGGGGCGCUccGCCgCACgcCAACUg- -3'
miRNA:   3'- gAUUCCCCGUGA--CGG-GUGa-GUUGGgg -5'
3581 3' -56.8 NC_001650.1 + 117890 0.66 0.917214
Target:  5'- ---uGGGGCuGCUGCaCCAcCUCGGCgCa -3'
miRNA:   3'- gauuCCCCG-UGACG-GGU-GAGUUGgGg -5'
3581 3' -56.8 NC_001650.1 + 118452 0.66 0.892759
Target:  5'- ---uGGcGGCcaaGCUGCCCGag-AACCCCg -3'
miRNA:   3'- gauuCC-CCG---UGACGGGUgagUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 119829 0.71 0.645155
Target:  5'- ---uGGGGCGCggcGUCCGCgccCAGCCCg -3'
miRNA:   3'- gauuCCCCGUGa--CGGGUGa--GUUGGGg -5'
3581 3' -56.8 NC_001650.1 + 120064 0.71 0.645155
Target:  5'- uCUuGGGGGCAUaguUGgCCACUaUAGCCCUg -3'
miRNA:   3'- -GAuUCCCCGUG---ACgGGUGA-GUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 121098 0.66 0.892759
Target:  5'- gCUuGGGGGCGUUGUCgCGCgCcGCCCCc -3'
miRNA:   3'- -GAuUCCCCGUGACGG-GUGaGuUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 121471 0.66 0.892759
Target:  5'- ----cGGGCGCcacuuuuacgagUGCCUGCgccgcugCAGCCCCa -3'
miRNA:   3'- gauucCCCGUG------------ACGGGUGa------GUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 121799 0.71 0.665286
Target:  5'- ---cGaGGGCGCUGCCCuccgCcGCCCCc -3'
miRNA:   3'- gauuC-CCCGUGACGGGuga-GuUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 122060 0.73 0.554917
Target:  5'- ---cGGGGCug-GCCCACaUCAggcGCCCCc -3'
miRNA:   3'- gauuCCCCGugaCGGGUG-AGU---UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 122272 0.69 0.781491
Target:  5'- -cAGGGGGCGCcugaUGUggGC-CAGCCCCg -3'
miRNA:   3'- gaUUCCCCGUG----ACGggUGaGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 122445 0.67 0.849529
Target:  5'- ---uGGGGCACcucGCCC-C-CGGCCUCg -3'
miRNA:   3'- gauuCCCCGUGa--CGGGuGaGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 124363 0.66 0.886084
Target:  5'- ---uGGGGCGCUGuuCCCAUcggCAggcGCUCCg -3'
miRNA:   3'- gauuCCCCGUGAC--GGGUGa--GU---UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 125117 0.71 0.675316
Target:  5'- uCUucGGaGGCGgUGCCCGCgUCucCCCCc -3'
miRNA:   3'- -GAuuCC-CCGUgACGGGUG-AGuuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 125788 0.68 0.816811
Target:  5'- -gAAGGGGCGCgGCgUCGaaggcggaUCAAUCCCa -3'
miRNA:   3'- gaUUCCCCGUGaCG-GGUg-------AGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 128751 0.68 0.833525
Target:  5'- -aGGGGGGCGCcgUGUCCAg--GACCCUg -3'
miRNA:   3'- gaUUCCCCGUG--ACGGGUgagUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 129051 0.7 0.724785
Target:  5'- ---uGGaGGCGgUGgCCGCgcgCGACCCCg -3'
miRNA:   3'- gauuCC-CCGUgACgGGUGa--GUUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.