miRNA display CGI


Results 161 - 180 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3581 3' -56.8 NC_001650.1 + 129232 0.67 0.867717
Target:  5'- -cGAGGGGaagcuguccgacgccCACUcccuggugGCCCGCUCcGCCgCCa -3'
miRNA:   3'- gaUUCCCC---------------GUGA--------CGGGUGAGuUGG-GG- -5'
3581 3' -56.8 NC_001650.1 + 129353 0.67 0.87919
Target:  5'- -gAAGaGGGC-C-GCCCccgugucCUCGGCCCCg -3'
miRNA:   3'- gaUUC-CCCGuGaCGGGu------GAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 129443 0.68 0.808205
Target:  5'- -gGAGuGGGCgucggacaGCUuCCC-CUCGACCCCc -3'
miRNA:   3'- gaUUC-CCCG--------UGAcGGGuGAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 130091 0.71 0.655229
Target:  5'- -aGGGGGGagaGCcGCCCGC-CAAgCCCa -3'
miRNA:   3'- gaUUCCCCg--UGaCGGGUGaGUUgGGG- -5'
3581 3' -56.8 NC_001650.1 + 130153 0.74 0.47798
Target:  5'- --cAGGGGCG-UGCCCGCcaCAGCCUCg -3'
miRNA:   3'- gauUCCCCGUgACGGGUGa-GUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 131083 0.68 0.816811
Target:  5'- uCUcGGGGGCGCUcuuguccaGCCCcccgguCUUGGCCUCg -3'
miRNA:   3'- -GAuUCCCCGUGA--------CGGGu-----GAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 131691 0.67 0.841619
Target:  5'- -gAAGGGGUugU-CCCGCgcgGACCCg -3'
miRNA:   3'- gaUUCCCCGugAcGGGUGag-UUGGGg -5'
3581 3' -56.8 NC_001650.1 + 132078 0.71 0.63507
Target:  5'- -aGAGGGGCGCgaaCCCGuCU-GACCCCc -3'
miRNA:   3'- gaUUCCCCGUGac-GGGU-GAgUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 132742 0.75 0.441512
Target:  5'- -cGGGGGGCGCgcguUGCCCAgguaaGACCCCu -3'
miRNA:   3'- gaUUCCCCGUG----ACGGGUgag--UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 133302 0.66 0.886084
Target:  5'- -gGAGGGG-GCUGCCCAggaGGCgCCg -3'
miRNA:   3'- gaUUCCCCgUGACGGGUgagUUGgGG- -5'
3581 3' -56.8 NC_001650.1 + 133433 0.69 0.781491
Target:  5'- ----cGGGCg--GCCCGCUCccAGCCCCc -3'
miRNA:   3'- gauucCCCGugaCGGGUGAG--UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 133929 0.67 0.857246
Target:  5'- --uGGGGGCGCccCCCA---GACCCCg -3'
miRNA:   3'- gauUCCCCGUGacGGGUgagUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 134129 0.68 0.825253
Target:  5'- uCUGGGGGGCGCc-CCCAgCUguACUCUg -3'
miRNA:   3'- -GAUUCCCCGUGacGGGU-GAguUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 134156 0.66 0.917214
Target:  5'- -aAGGGGGCGa---CCGCgggCGGCCCUc -3'
miRNA:   3'- gaUUCCCCGUgacgGGUGa--GUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 135894 0.73 0.535269
Target:  5'- -aGGGGGGCcuCUGCCCGCcCcuCCCUg -3'
miRNA:   3'- gaUUCCCCGu-GACGGGUGaGuuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 136038 0.7 0.734481
Target:  5'- -cGGGGGGaggaCGgUGCCCuGCggCAACCCCu -3'
miRNA:   3'- gaUUCCCC----GUgACGGG-UGa-GUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 136051 0.69 0.753606
Target:  5'- -cGAGGGGCAgaGagUACUCccccAGCCCCg -3'
miRNA:   3'- gaUUCCCCGUgaCggGUGAG----UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 136096 0.73 0.545065
Target:  5'- --cGGGGGCg--GCCUugUCcAGCCCCa -3'
miRNA:   3'- gauUCCCCGugaCGGGugAG-UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 136433 0.66 0.892759
Target:  5'- -gAAGcGGGCGCaguccuccucGCCCACgcgCAGgCCCu -3'
miRNA:   3'- gaUUC-CCCGUGa---------CGGGUGa--GUUgGGG- -5'
3581 3' -56.8 NC_001650.1 + 138135 0.67 0.87919
Target:  5'- gUGAGGcugaGGCGCUGCCacagAUUCcuGCCCUg -3'
miRNA:   3'- gAUUCC----CCGUGACGGg---UGAGu-UGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.