miRNA display CGI


Results 61 - 80 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3581 3' -56.8 NC_001650.1 + 132078 0.71 0.63507
Target:  5'- -aGAGGGGCGCgaaCCCGuCU-GACCCCc -3'
miRNA:   3'- gaUUCCCCGUGac-GGGU-GAgUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 131691 0.67 0.841619
Target:  5'- -gAAGGGGUugU-CCCGCgcgGACCCg -3'
miRNA:   3'- gaUUCCCCGugAcGGGUGag-UUGGGg -5'
3581 3' -56.8 NC_001650.1 + 131083 0.68 0.816811
Target:  5'- uCUcGGGGGCGCUcuuguccaGCCCcccgguCUUGGCCUCg -3'
miRNA:   3'- -GAuUCCCCGUGA--------CGGGu-----GAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 130153 0.74 0.47798
Target:  5'- --cAGGGGCG-UGCCCGCcaCAGCCUCg -3'
miRNA:   3'- gauUCCCCGUgACGGGUGa-GUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 130091 0.71 0.655229
Target:  5'- -aGGGGGGagaGCcGCCCGC-CAAgCCCa -3'
miRNA:   3'- gaUUCCCCg--UGaCGGGUGaGUUgGGG- -5'
3581 3' -56.8 NC_001650.1 + 129443 0.68 0.808205
Target:  5'- -gGAGuGGGCgucggacaGCUuCCC-CUCGACCCCc -3'
miRNA:   3'- gaUUC-CCCG--------UGAcGGGuGAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 129353 0.67 0.87919
Target:  5'- -gAAGaGGGC-C-GCCCccgugucCUCGGCCCCg -3'
miRNA:   3'- gaUUC-CCCGuGaCGGGu------GAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 129232 0.67 0.867717
Target:  5'- -cGAGGGGaagcuguccgacgccCACUcccuggugGCCCGCUCcGCCgCCa -3'
miRNA:   3'- gaUUCCCC---------------GUGA--------CGGGUGAGuUGG-GG- -5'
3581 3' -56.8 NC_001650.1 + 129051 0.7 0.724785
Target:  5'- ---uGGaGGCGgUGgCCGCgcgCGACCCCg -3'
miRNA:   3'- gauuCC-CCGUgACgGGUGa--GUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 128751 0.68 0.833525
Target:  5'- -aGGGGGGCGCcgUGUCCAg--GACCCUg -3'
miRNA:   3'- gaUUCCCCGUG--ACGGGUgagUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 125788 0.68 0.816811
Target:  5'- -gAAGGGGCGCgGCgUCGaaggcggaUCAAUCCCa -3'
miRNA:   3'- gaUUCCCCGUGaCG-GGUg-------AGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 125117 0.71 0.675316
Target:  5'- uCUucGGaGGCGgUGCCCGCgUCucCCCCc -3'
miRNA:   3'- -GAuuCC-CCGUgACGGGUG-AGuuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 124363 0.66 0.886084
Target:  5'- ---uGGGGCGCUGuuCCCAUcggCAggcGCUCCg -3'
miRNA:   3'- gauuCCCCGUGAC--GGGUGa--GU---UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 122445 0.67 0.849529
Target:  5'- ---uGGGGCACcucGCCC-C-CGGCCUCg -3'
miRNA:   3'- gauuCCCCGUGa--CGGGuGaGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 122272 0.69 0.781491
Target:  5'- -cAGGGGGCGCcugaUGUggGC-CAGCCCCg -3'
miRNA:   3'- gaUUCCCCGUG----ACGggUGaGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 122060 0.73 0.554917
Target:  5'- ---cGGGGCug-GCCCACaUCAggcGCCCCc -3'
miRNA:   3'- gauuCCCCGugaCGGGUG-AGU---UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 121799 0.71 0.665286
Target:  5'- ---cGaGGGCGCUGCCCuccgCcGCCCCc -3'
miRNA:   3'- gauuC-CCCGUGACGGGuga-GuUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 121471 0.66 0.892759
Target:  5'- ----cGGGCGCcacuuuuacgagUGCCUGCgccgcugCAGCCCCa -3'
miRNA:   3'- gauucCCCGUG------------ACGGGUGa------GUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 121098 0.66 0.892759
Target:  5'- gCUuGGGGGCGUUGUCgCGCgCcGCCCCc -3'
miRNA:   3'- -GAuUCCCCGUGACGG-GUGaGuUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 120064 0.71 0.645155
Target:  5'- uCUuGGGGGCAUaguUGgCCACUaUAGCCCUg -3'
miRNA:   3'- -GAuUCCCCGUG---ACgGGUGA-GUUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.