Results 81 - 100 of 228 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3581 | 3' | -56.8 | NC_001650.1 | + | 119829 | 0.71 | 0.645155 |
Target: 5'- ---uGGGGCGCggcGUCCGCgccCAGCCCg -3' miRNA: 3'- gauuCCCCGUGa--CGGGUGa--GUUGGGg -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 118452 | 0.66 | 0.892759 |
Target: 5'- ---uGGcGGCcaaGCUGCCCGag-AACCCCg -3' miRNA: 3'- gauuCC-CCG---UGACGGGUgagUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 117890 | 0.66 | 0.917214 |
Target: 5'- ---uGGGGCuGCUGCaCCAcCUCGGCgCa -3' miRNA: 3'- gauuCCCCG-UGACG-GGU-GAGUUGgGg -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 117673 | 0.67 | 0.857246 |
Target: 5'- gUGGGGGGCGCUccGCCgCACgcCAACUg- -3' miRNA: 3'- gAUUCCCCGUGA--CGG-GUGa-GUUGGgg -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 117333 | 0.66 | 0.905442 |
Target: 5'- --cGGGGGCgacgucuccaaGCUGCCC-C-CG-CCCCu -3' miRNA: 3'- gauUCCCCG-----------UGACGGGuGaGUuGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 112192 | 0.74 | 0.468721 |
Target: 5'- --cAGGGG-GCUGCCCAcCUUAACCUCc -3' miRNA: 3'- gauUCCCCgUGACGGGU-GAGUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 111483 | 0.67 | 0.849529 |
Target: 5'- -gGGGcGGGCACUGCUgCGggCGagGCCCCa -3' miRNA: 3'- gaUUC-CCCGUGACGG-GUgaGU--UGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 111442 | 0.67 | 0.87919 |
Target: 5'- ---uGGGGCAgcauCUGCCUcCUCucuCCCUg -3' miRNA: 3'- gauuCCCCGU----GACGGGuGAGuu-GGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 111405 | 0.66 | 0.899213 |
Target: 5'- --uGGGGGCGCggGCCgC-CUgAGCCgCCu -3' miRNA: 3'- gauUCCCCGUGa-CGG-GuGAgUUGG-GG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 111270 | 0.68 | 0.799444 |
Target: 5'- ---uGGGGC-CUcGCCCGCagCAgugcccGCCCCa -3' miRNA: 3'- gauuCCCCGuGA-CGGGUGa-GU------UGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 111116 | 0.67 | 0.857246 |
Target: 5'- ---cGGGGC-CUGCUCGCcc--CCCCa -3' miRNA: 3'- gauuCCCCGuGACGGGUGaguuGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 110928 | 0.67 | 0.840015 |
Target: 5'- gCUGAGGcuguugcugcugcGGCAgccuggcCUGCCCGCUgGGUCCCg -3' miRNA: 3'- -GAUUCC-------------CCGU-------GACGGGUGAgUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 109476 | 0.7 | 0.724785 |
Target: 5'- ---cGGGGCGCccCCCACUaucgccACCCCg -3' miRNA: 3'- gauuCCCCGUGacGGGUGAgu----UGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 109278 | 0.78 | 0.30614 |
Target: 5'- gUGGGGGGCGC--CCCGCUCGucGCCCUg -3' miRNA: 3'- gAUUCCCCGUGacGGGUGAGU--UGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 108945 | 0.7 | 0.695266 |
Target: 5'- cCUGAGGGGCucggggaagagGCUGUCUuugACgccccccgCGACCCCc -3' miRNA: 3'- -GAUUCCCCG-----------UGACGGG---UGa-------GUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 108722 | 0.66 | 0.910261 |
Target: 5'- -cGGGGGGCGucaaagacagccuCUuccccgaGCCC-CUCAgguGCCCCg -3' miRNA: 3'- gaUUCCCCGU-------------GA-------CGGGuGAGU---UGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 107634 | 0.66 | 0.886084 |
Target: 5'- gUGGGGaGGCuCUGCUgACUCuAugCCUg -3' miRNA: 3'- gAUUCC-CCGuGACGGgUGAG-UugGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 106359 | 0.72 | 0.624983 |
Target: 5'- -cAGGGGGCugUggGUCCACUUGACCa- -3' miRNA: 3'- gaUUCCCCGugA--CGGGUGAGUUGGgg -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 105616 | 0.67 | 0.872082 |
Target: 5'- -aGAGGGGUACU-UCUACUUAucuGCCUCu -3' miRNA: 3'- gaUUCCCCGUGAcGGGUGAGU---UGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 101801 | 0.68 | 0.808205 |
Target: 5'- -aGAGGGGC--UGCCCGCUgGcggagaagauACCCg -3' miRNA: 3'- gaUUCCCCGugACGGGUGAgU----------UGGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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