miRNA display CGI


Results 121 - 140 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3581 3' -56.8 NC_001650.1 + 77968 0.67 0.864766
Target:  5'- -cGAGGGGCcgucGC-GCCCAC-CAAgCUCa -3'
miRNA:   3'- gaUUCCCCG----UGaCGGGUGaGUUgGGG- -5'
3581 3' -56.8 NC_001650.1 + 77252 0.7 0.724785
Target:  5'- --cAGGGGCACgagaCCAC-CGACUCCu -3'
miRNA:   3'- gauUCCCCGUGacg-GGUGaGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 76640 0.7 0.695266
Target:  5'- -gAAGGcGCGC-GCCUuCUCGGCCCCc -3'
miRNA:   3'- gaUUCCcCGUGaCGGGuGAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 75507 0.68 0.824417
Target:  5'- -aGGGGGGCGCUGuUCCAgguuugcgcgcgcCUC-GCCCUc -3'
miRNA:   3'- gaUUCCCCGUGAC-GGGU-------------GAGuUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 75460 0.66 0.882664
Target:  5'- -aGAGGGGCugucgcuggaacgGCUGCCCucCUCuggcgaucguguuGCCCg -3'
miRNA:   3'- gaUUCCCCG-------------UGACGGGu-GAGu------------UGGGg -5'
3581 3' -56.8 NC_001650.1 + 74468 0.68 0.833525
Target:  5'- uUGAGGGGUACcacagaGCCCAC-CcuCUCCu -3'
miRNA:   3'- gAUUCCCCGUGa-----CGGGUGaGuuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 71884 0.69 0.744091
Target:  5'- --uGGGGGaugUUGCCCAC-CAugCCCc -3'
miRNA:   3'- gauUCCCCgu-GACGGGUGaGUugGGG- -5'
3581 3' -56.8 NC_001650.1 + 71651 0.75 0.432643
Target:  5'- --uGGGGGgGCUGCUCguACUCGAgCCCg -3'
miRNA:   3'- gauUCCCCgUGACGGG--UGAGUUgGGG- -5'
3581 3' -56.8 NC_001650.1 + 70500 0.68 0.824417
Target:  5'- -gAGGGGGCugguggacaccguGCUGCacgugaaGCUCAggagcGCCCCg -3'
miRNA:   3'- gaUUCCCCG-------------UGACGgg-----UGAGU-----UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 68827 0.66 0.913779
Target:  5'- -cGAGGGGCGggGCgC-CUCGgacgggacgugccgcGCCCCg -3'
miRNA:   3'- gaUUCCCCGUgaCGgGuGAGU---------------UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 68681 0.7 0.724785
Target:  5'- -cAGGGGGCGCcGUCUcucccccgGCUCAaagagcGCCCCc -3'
miRNA:   3'- gaUUCCCCGUGaCGGG--------UGAGU------UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 67325 0.66 0.886084
Target:  5'- --cAGGGGCAC-GUCgCugUCGGcgguCCCCa -3'
miRNA:   3'- gauUCCCCGUGaCGG-GugAGUU----GGGG- -5'
3581 3' -56.8 NC_001650.1 + 63202 0.67 0.872082
Target:  5'- aUGAGGGuCGucUUGCCCACccccaUgGACCCCu -3'
miRNA:   3'- gAUUCCCcGU--GACGGGUG-----AgUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 63141 0.76 0.373611
Target:  5'- aUGAGGGGCACgUGCCa----GACCCCa -3'
miRNA:   3'- gAUUCCCCGUG-ACGGgugagUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 63098 0.66 0.911443
Target:  5'- uCUGGGGGuCGC-GCCCccggguGCUCcggAGCCCCc -3'
miRNA:   3'- -GAUUCCCcGUGaCGGG------UGAG---UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 59945 0.74 0.506279
Target:  5'- --cGGGGGcCACggGCCC-CUCGacGCCCCu -3'
miRNA:   3'- gauUCCCC-GUGa-CGGGuGAGU--UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 59475 0.66 0.911443
Target:  5'- -cGGGGGGCACcuuccUGCCCAggacgcagUCGuCCCUg -3'
miRNA:   3'- gaUUCCCCGUG-----ACGGGUg-------AGUuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 59084 0.66 0.911443
Target:  5'- -cAAGGacaGCAggGCCUuauauCUCAACCCCg -3'
miRNA:   3'- gaUUCCc--CGUgaCGGGu----GAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 59046 0.68 0.824417
Target:  5'- --uGGGGGCucauCUGCCUcucccggGCcCGAUCCCa -3'
miRNA:   3'- gauUCCCCGu---GACGGG-------UGaGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 58858 0.66 0.905442
Target:  5'- ----aGGGCGgaccaccacCUGCCC-CcCAACCCCa -3'
miRNA:   3'- gauucCCCGU---------GACGGGuGaGUUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.