Results 141 - 160 of 228 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3581 | 3' | -56.8 | NC_001650.1 | + | 58552 | 0.66 | 0.886084 |
Target: 5'- --uGGGGGUGucGCCCccCUUGGCCCCg -3' miRNA: 3'- gauUCCCCGUgaCGGGu-GAGUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 58430 | 0.66 | 0.911443 |
Target: 5'- --cAGGGGC--UGCCCGC-CAAUCUa -3' miRNA: 3'- gauUCCCCGugACGGGUGaGUUGGGg -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 57977 | 0.7 | 0.734481 |
Target: 5'- ---cGGGGCgucgauggGCUGUCCGaacCUCuGCCCCa -3' miRNA: 3'- gauuCCCCG--------UGACGGGU---GAGuUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 57460 | 0.69 | 0.781491 |
Target: 5'- ---cGGGGCGCaGCagcaacagCCGCccCAACCCCa -3' miRNA: 3'- gauuCCCCGUGaCG--------GGUGa-GUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 56287 | 0.68 | 0.825253 |
Target: 5'- -gGGGGGGUGgUGCCUggcGCgc-GCCCCa -3' miRNA: 3'- gaUUCCCCGUgACGGG---UGaguUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 53056 | 0.68 | 0.807336 |
Target: 5'- -aGAGGaGGCGC-GCCCGCUCccagggcgggcagGGCgCCg -3' miRNA: 3'- gaUUCC-CCGUGaCGGGUGAG-------------UUGgGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 52997 | 0.7 | 0.734481 |
Target: 5'- -cGAGGcGCGCUGCCuCGC---GCCCCg -3' miRNA: 3'- gaUUCCcCGUGACGG-GUGaguUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 52616 | 0.66 | 0.917214 |
Target: 5'- --uGGGGGcCACUgGCCCGggggucCUCGgcACCUCg -3' miRNA: 3'- gauUCCCC-GUGA-CGGGU------GAGU--UGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 51216 | 0.68 | 0.816811 |
Target: 5'- -gAGGGGGcCGCcgcGCCCGCgc--CCCCg -3' miRNA: 3'- gaUUCCCC-GUGa--CGGGUGaguuGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 51006 | 0.68 | 0.808205 |
Target: 5'- --cGGGGGCGCggGCgCGg-CGGCCCCc -3' miRNA: 3'- gauUCCCCGUGa-CGgGUgaGUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 50951 | 0.66 | 0.911443 |
Target: 5'- ---uGGuGGCGgcGCCCACcgCGGCCCUg -3' miRNA: 3'- gauuCC-CCGUgaCGGGUGa-GUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 50667 | 0.69 | 0.760204 |
Target: 5'- -cGGGGGGCcugaccuucuaccuGCUGCCCG--UGACCCUg -3' miRNA: 3'- gaUUCCCCG--------------UGACGGGUgaGUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 50542 | 0.67 | 0.87708 |
Target: 5'- -cGAGGuGGCcuuccuggcgguggAgUGCCCGCgCAACCCg -3' miRNA: 3'- gaUUCC-CCG--------------UgACGGGUGaGUUGGGg -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 49863 | 0.7 | 0.685313 |
Target: 5'- -aGAGGGGCAagGCCCAC----CCCCa -3' miRNA: 3'- gaUUCCCCGUgaCGGGUGaguuGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 49748 | 0.69 | 0.763017 |
Target: 5'- --uAGGGGCACcgUGCCCGgCgcgCAGCCg- -3' miRNA: 3'- gauUCCCCGUG--ACGGGU-Ga--GUUGGgg -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 49657 | 0.7 | 0.734481 |
Target: 5'- cCUGGGGGuGgGCcuUGCCC-CUCuacGCCCCc -3' miRNA: 3'- -GAUUCCC-CgUG--ACGGGuGAGu--UGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 48471 | 0.72 | 0.594783 |
Target: 5'- gCUAGGGGGCuaGCcGCCUggaagCAGCCCCc -3' miRNA: 3'- -GAUUCCCCG--UGaCGGGuga--GUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 48252 | 0.7 | 0.734481 |
Target: 5'- -cGAGGGGgGCUGCUUccagGCggcUAGCCCCc -3' miRNA: 3'- gaUUCCCCgUGACGGG----UGa--GUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 48031 | 0.69 | 0.781491 |
Target: 5'- -aAAGaGGGCgGCgGCCCugUCuGCCCg -3' miRNA: 3'- gaUUC-CCCG-UGaCGGGugAGuUGGGg -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 47282 | 0.66 | 0.886084 |
Target: 5'- -cGAGGGGC---GCCCGCgaggaUAGCCCg -3' miRNA: 3'- gaUUCCCCGugaCGGGUGa----GUUGGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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