Results 61 - 80 of 228 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3581 | 3' | -56.8 | NC_001650.1 | + | 16149 | 0.71 | 0.63507 |
Target: 5'- aCUGAGaaGGC-CUGCCCACU-GACCUCa -3' miRNA: 3'- -GAUUCc-CCGuGACGGGUGAgUUGGGG- -5' |
|||||||
3581 | 3' | -56.8 | NC_001650.1 | + | 182856 | 0.71 | 0.63507 |
Target: 5'- aCUGAGaaGGC-CUGCCCACU-GACCUCa -3' miRNA: 3'- -GAUUCc-CCGuGACGGGUGAgUUGGGG- -5' |
|||||||
3581 | 3' | -56.8 | NC_001650.1 | + | 77252 | 0.7 | 0.724785 |
Target: 5'- --cAGGGGCACgagaCCAC-CGACUCCu -3' miRNA: 3'- gauUCCCCGUGacg-GGUGaGUUGGGG- -5' |
|||||||
3581 | 3' | -56.8 | NC_001650.1 | + | 129051 | 0.7 | 0.724785 |
Target: 5'- ---uGGaGGCGgUGgCCGCgcgCGACCCCg -3' miRNA: 3'- gauuCC-CCGUgACgGGUGa--GUUGGGG- -5' |
|||||||
3581 | 3' | -56.8 | NC_001650.1 | + | 68681 | 0.7 | 0.724785 |
Target: 5'- -cAGGGGGCGCcGUCUcucccccgGCUCAaagagcGCCCCc -3' miRNA: 3'- gaUUCCCCGUGaCGGG--------UGAGU------UGGGG- -5' |
|||||||
3581 | 3' | -56.8 | NC_001650.1 | + | 22984 | 0.7 | 0.731581 |
Target: 5'- -gAGGGGGUcuucaagaccuucgGCUGCCgGgUCAGCCUg -3' miRNA: 3'- gaUUCCCCG--------------UGACGGgUgAGUUGGGg -5' |
|||||||
3581 | 3' | -56.8 | NC_001650.1 | + | 13640 | 0.7 | 0.734481 |
Target: 5'- gCUGAGGGGgaCGCUGCCa----GACCCUg -3' miRNA: 3'- -GAUUCCCC--GUGACGGgugagUUGGGG- -5' |
|||||||
3581 | 3' | -56.8 | NC_001650.1 | + | 57977 | 0.7 | 0.734481 |
Target: 5'- ---cGGGGCgucgauggGCUGUCCGaacCUCuGCCCCa -3' miRNA: 3'- gauuCCCCG--------UGACGGGU---GAGuUGGGG- -5' |
|||||||
3581 | 3' | -56.8 | NC_001650.1 | + | 180347 | 0.7 | 0.734481 |
Target: 5'- gCUGAGGGGgaCGCUGCCa----GACCCUg -3' miRNA: 3'- -GAUUCCCC--GUGACGGgugagUUGGGG- -5' |
|||||||
3581 | 3' | -56.8 | NC_001650.1 | + | 48252 | 0.7 | 0.734481 |
Target: 5'- -cGAGGGGgGCUGCUUccagGCggcUAGCCCCc -3' miRNA: 3'- gaUUCCCCgUGACGGG----UGa--GUUGGGG- -5' |
|||||||
3581 | 3' | -56.8 | NC_001650.1 | + | 27598 | 0.7 | 0.715011 |
Target: 5'- ----cGGGCG-UGCCCGcCUCGGCCCUc -3' miRNA: 3'- gauucCCCGUgACGGGU-GAGUUGGGG- -5' |
|||||||
3581 | 3' | -56.8 | NC_001650.1 | + | 31028 | 0.7 | 0.712065 |
Target: 5'- -cGGGGGGCGCccuCCCACUUuuuugacgcgcacaGACCCUc -3' miRNA: 3'- gaUUCCCCGUGac-GGGUGAG--------------UUGGGG- -5' |
|||||||
3581 | 3' | -56.8 | NC_001650.1 | + | 93375 | 0.71 | 0.63507 |
Target: 5'- cCUuuGGGGCGCUGgCCAagaugggCAcCCCCa -3' miRNA: 3'- -GAuuCCCCGUGACgGGUga-----GUuGGGG- -5' |
|||||||
3581 | 3' | -56.8 | NC_001650.1 | + | 120064 | 0.71 | 0.645155 |
Target: 5'- uCUuGGGGGCAUaguUGgCCACUaUAGCCCUg -3' miRNA: 3'- -GAuUCCCCGUG---ACgGGUGA-GUUGGGG- -5' |
|||||||
3581 | 3' | -56.8 | NC_001650.1 | + | 119829 | 0.71 | 0.645155 |
Target: 5'- ---uGGGGCGCggcGUCCGCgccCAGCCCg -3' miRNA: 3'- gauuCCCCGUGa--CGGGUGa--GUUGGGg -5' |
|||||||
3581 | 3' | -56.8 | NC_001650.1 | + | 130091 | 0.71 | 0.655229 |
Target: 5'- -aGGGGGGagaGCcGCCCGC-CAAgCCCa -3' miRNA: 3'- gaUUCCCCg--UGaCGGGUGaGUUgGGG- -5' |
|||||||
3581 | 3' | -56.8 | NC_001650.1 | + | 157291 | 0.71 | 0.665286 |
Target: 5'- cCUGGGGGGCACcucCCCGCccCcGCCCUc -3' miRNA: 3'- -GAUUCCCCGUGac-GGGUGa-GuUGGGG- -5' |
|||||||
3581 | 3' | -56.8 | NC_001650.1 | + | 78959 | 0.7 | 0.685313 |
Target: 5'- --uGGGGGCGCagaUGCCC-CgCGGCCCa -3' miRNA: 3'- gauUCCCCGUG---ACGGGuGaGUUGGGg -5' |
|||||||
3581 | 3' | -56.8 | NC_001650.1 | + | 76640 | 0.7 | 0.695266 |
Target: 5'- -gAAGGcGCGC-GCCUuCUCGGCCCCc -3' miRNA: 3'- gaUUCCcCGUGaCGGGuGAGUUGGGG- -5' |
|||||||
3581 | 3' | -56.8 | NC_001650.1 | + | 90810 | 0.7 | 0.705169 |
Target: 5'- gUGGGGGGCagguugauGCUGUCCAC-CAGgUCCu -3' miRNA: 3'- gAUUCCCCG--------UGACGGGUGaGUUgGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home